Sphingomonas sp. FARSPH: DM480_15670
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Entry
DM480_15670 CDS
T05685
Name
(GenBank) MBL fold hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM480_15670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphf03019
]
DM480_15670
Messenger RNA biogenesis [BR:
sphf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM480_15670
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RMMBL
Lactamase_B_2
RNase_J_C
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AXJ96709
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Position
complement(3317825..3319465)
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AA seq
546 aa
AA seq
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MTPKNNELLFCALGGSGEIGMNVNLYGHAGKWLMVDCGVTFADAAYPGIDLILPDLAFIE
DRRDDLVGIVLTHGHEDHIGALPYLAEDLGVPLYATPFTAGLIRGKLEEEGNANRVKLRV
VQPGGSETIGPFGIRFVELSHSIPEPNALVIETAAGRVFHTGDWKLDPHPVIGKPTSGET
LAKIGDAGIDVLVCDSTNVFNEDASGSESSVRRGLAETIAKARGRVLVTTFASNAARLHT
LGKVARETGRKLCVTGRSLDRILKVARACGYLGDFPETVDPETAMRLPKNKVLIVATGGQ
GEPRAALARVADGSHTIKLDEGDTVIFSSKQIPGNEIAIGKIQNTLAAKGVRMVTERQAH
VHVSGHPGRPELAQMYQWIRPELLVPVHGEMRHMMEHARYAQAQGVPQAVVQSDGEIVRL
LPGKAAKIGHAGVGRLVLDGDVILPADGSTINERRKLAINGQISVAVAVDRNGRGIGRPQ
VRVQGVPVEEDRLAFVEDAAAAAQEALNGGKREIERRREDIRLAVRRVATRWTGKKPIVD
VLIVQA
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgactcccaagaataacgaactgctcttctgtgcgctcggcggctcaggcgagatcggc
atgaacgtcaacctgtatggccatgccggcaagtggctgatggtcgattgcggcgtgacc
ttcgccgacgccgcctatcccggcatcgacctgatcctgcccgacctcgccttcatcgag
gatcgtcgtgacgatctggtcggtatcgtcctgacccacgggcatgaggatcatatcggc
gcgctgccgtatctggccgaggacctgggcgtgccgctgtacgcgacgccgttcaccgcg
ggcctgatccgcggcaagctggaggaagagggcaacgccaaccgcgtcaagctgcgcgtc
gtgcagccgggcggatcggagacgatcgggccgttcggcatccgtttcgtcgaactgtcg
cattccatccccgagccgaacgcgctggtgatcgagaccgcggcgggccgcgtgttccac
accggcgactggaagctcgatccgcatccggtgatcggcaagccgaccagcggcgagacg
ctggccaagatcggcgatgccgggatcgacgtgctggtgtgcgattcgaccaacgtgttc
aacgaggacgcttctggctccgaatcgtcggtgcgccgcggccttgccgagacgatcgcc
aaggcgcgcggtcgcgtgctggtgacgaccttcgcgtcgaacgcggcgcggctccacacc
ttgggcaaggtcgcacgcgagacggggcgtaaattgtgcgtcaccgggcgctcgctcgac
cggatcctgaaggtcgcgcgcgcgtgcggctacctcggcgattttcccgagacggtcgat
cccgagacggcgatgcggctgcccaagaacaaggtgctgatcgtcgccaccggcggccag
ggcgaaccgcgcgcggcgctggcgcgcgtcgccgacggcagccatacgatcaagctggac
gagggcgatacggtcatcttctcgtcgaagcagatcccgggcaacgagatcgcgatcggc
aagatccagaacacgctggcggccaagggcgtccggatggtgaccgagcggcaggcgcac
gtccacgtctccggccacccgggtcgcccggagctggcgcagatgtatcaatggatccgc
cccgagctgctggtgccggtgcacggcgagatgcgccacatgatggagcatgcacgctac
gcacaggcgcagggtgtgccgcaggcggtggtgcagagcgacggcgagatcgtccgcctg
ctgccaggcaaggccgcgaagatcggccatgccggcgtcggccggctggtgctggacggc
gacgtgatcctgcctgccgacggatcgacgatcaacgagcggcgcaagctggcgatcaac
ggccagatttcggtcgcggtcgcggtcgatcgcaacgggcgcggcatcggccgcccgcag
gtgcgcgtgcagggcgtgccggtcgaggaagaccggcttgccttcgtcgaggatgccgcc
gctgcggcgcaggaggcgctgaacggcggcaagcgcgagatcgagcgccggcgcgaggac
attcgcctggcggtgcgccgcgtcgcgacgcgctggacgggcaagaagccgatcgtcgac
gtgctgatcgtccaggcctga
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