Sphingomonas sp. FARSPH: DM480_17495
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Entry
DM480_17495 CDS
T05685
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
sphf
Sphingomonas sp. FARSPH
Pathway
sphf00521
Streptomycin biosynthesis
sphf00523
Polyketide sugar unit biosynthesis
sphf00525
Acarbose and validamycin biosynthesis
sphf00541
Biosynthesis of various nucleotide sugars
sphf01100
Metabolic pathways
sphf01110
Biosynthesis of secondary metabolites
sphf01250
Biosynthesis of nucleotide sugars
Module
sphf_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
sphf00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
DM480_17495 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
DM480_17495 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
DM480_17495 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
DM480_17495 (rfbB)
00525 Acarbose and validamycin biosynthesis
DM480_17495 (rfbB)
Enzymes [BR:
sphf01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
DM480_17495 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
3Beta_HSD
Polysacc_synt_2
NAD_binding_4
adh_short
NAD_binding_10
KR
Motif
Other DBs
NCBI-ProteinID:
AXJ97475
UniProt:
A0A345WUX3
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Position
p02:76921..77970
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AA seq
349 aa
AA seq
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MRIFVTGGAGFIGSALVRHLIENTTHEVLNFDKLTYAGTLSTVERVANSNRYRFVQGDIC
DAEAVRASIAEFKPDVVTHLAAESHVDRSIDGPGAFVQTNVVGTYTMLAEARAYWLGLDE
AARKAFRFHHISTDEVYGSLGDTGLFTEETPYDPRSPYSASKASSDHLVSAWGHTFGLPV
LITNCSNNYGPYHFPEKLIPLMIAKALDGEPLPIYGKGDQVRDWLYVEDHVRALQAVFER
GEPGRTYNVGGHNERQNIEVVKTLCAILDELRPRADGKPYAEQMAQVADRPGHDKRYAID
ASRIGEELGWTPAETFETGIAKTVDWYLANESWWRPLVAAKASERRGVA
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcttcgtcaccggcggggccggcttcatcggctcggcgctcgtccggcacctg
atcgaaaacaccacgcacgaagtgctcaacttcgacaagctgacctatgcgggcacgctg
tcgacggtcgagcgcgtcgcgaacagcaaccgctatcggttcgtgcagggtgacatctgc
gacgccgaggcggtccgcgcctcgatcgccgagttcaagcccgacgtcgtcacccacctc
gcggccgaaagccatgtcgaccgttcgatcgacggccccggcgcgttcgtgcagaccaat
gttgtcggcacctatacgatgctggccgaggcgcgcgcctattggctcggcctcgacgag
gcggcgcgcaaagcgttccgcttccatcatatttcgaccgatgaagtatacggcagcctc
ggcgataccgggctgttcaccgaagagacgccctacgacccgcgctcgccctattccgcg
tcgaaggcgagcagcgaccatctggtcagtgcctggggacataccttcgggctgccggtg
ctgatcaccaactgctcgaacaattacggcccctaccacttccctgaaaagctcatcccg
ctgatgatcgccaaggcgctcgatggcgagccgctgccgatctacggcaagggcgaccag
gtgcgcgactggctgtatgtcgaggatcatgtccgcgcgctgcaggcggtgttcgagcgg
ggtgaaccgggccgcacctacaatgtcggcgggcacaacgagcggcagaatatcgaggtg
gtgaagacgctctgcgcgatcctcgacgaactgcgtccccgcgccgacggcaagccctac
gccgagcagatggcgcaagtcgccgaccgtcccgggcacgacaagcgctatgcgatcgac
gcgagccggatcggcgaggaactgggctggacgcccgccgagacgttcgagaccgggatc
gccaagaccgtcgactggtatctcgccaacgagagctggtggcgcccgctggtcgccgcc
aaggcgtccgaacgccgtggggtcgcctga
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