Sphingorhabdus sp. M41: AZE99_05110
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Entry
AZE99_05110 CDS
T04317
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphg
Sphingorhabdus sp. M41
Brite
KEGG Orthology (KO) [BR:
sphg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphg03016
]
AZE99_05110
Enzymes [BR:
sphg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
AZE99_05110
Transfer RNA biogenesis [BR:
sphg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AZE99_05110
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DUF167
Motif
Other DBs
NCBI-ProteinID:
AMO73236
UniProt:
A0A127MJ21
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All DBs
Position
complement(1056736..1057926)
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AA seq
396 aa
AA seq
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MHIHNLLTDNQDIADICARFATADFITVDTEFMRENTYWPILCLIQISDGKEAAAIDPLA
KGVDLGPLLELMVNNENVLKIFHAGGQDVEIIHNLTGKTPHPIFDTQIAAMAIGQSEQIG
YANLVDSWLGITLDKGARFTDWSRRPLNTRQLEYAVADVTHLAKIFPMMLEKLRETGRGR
WINAEMEKLADPENYVNDPEKSWLRVKSQGRNLDMLGRLKALAAWREREAQSKDLPRGRI
MRDETLADIAAHPPKDQAKLGQVRGLSAGWKNNDIGARLMDVIEQAEPLSRDDLPLKIGR
RPKNGKSNALVTDLLKLLLKIRSAEMNVASRLLARADDLERIVAGEREDVPLLEGWRYEE
FGRDALDLVEGRVSFTVKDGKLKMTHQQEGDSAEAE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgcacatccacaatttgctgacagacaatcaggacatcgccgatatctgcgctcgcttt
gcgacggcggatttcatcacggttgatacagagttcatgcgcgagaacacatattggccc
attctctgcctcatccagatttccgacggcaaggaagccgccgcgattgaccctctggca
aaaggcgtcgatcttggccccttgcttgagttgatggtcaacaatgagaatgtgctcaag
attttccacgctggcgggcaggatgtagaaatcatccacaatctgaccggcaagactcct
cacccgatatttgacacccagatcgctgccatggcgatcggccagagcgaacagatcggc
tatgccaatctggttgacagctggctgggaatcacgttggacaaaggcgcccgatttact
gactggtcacgccgaccgctcaacacacgccaactcgaatatgccgtggctgacgtcacc
catctggccaaaattttcccgatgatgctggaaaaattgcgagagacgggacggggcaga
tggattaatgccgagatggaaaaactcgcagatcccgaaaattacgtgaatgatccggaa
aaatcctggctgcgggtcaagtcgcagggaagaaatctggacatgctcggcagactgaaa
gcgctggccgcttggcgggagcgagaagcccagtccaaagacctgccgcgcggacggatc
atgcgcgatgaaacactggcagacatcgccgcccatccccccaaggatcaagcaaagctg
gggcaggtccgcggactttcggctggttggaaaaacaacgatattggcgcccgtttgatg
gatgttatcgaacaggcggaaccgctgtcacgggacgatctgccgctcaaaatcgggcgg
cgcccgaaaaatggcaaatccaacgcactggtcacggatctgctcaaattattgctcaag
attcgttcggcggagatgaatgtcgcatcccgcctacttgctcgtgccgatgacctggaa
cgcatcgtcgccggagaacgcgaagacgtgcctctactcgaaggctggcgctatgaagaa
tttggccgggacgcactggatctggttgaaggccgggtgagcttcaccgtgaaagatggc
aagctcaaaatgacccaccagcaagaaggtgacagcgctgaagcggaatag
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