Sphingorhabdus sp. M41: AZE99_05680
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Entry
AZE99_05680 CDS
T04317
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
sphg
Sphingorhabdus sp. M41
Pathway
sphg03420
Nucleotide excision repair
sphg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sphg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AZE99_05680
03430 Mismatch repair
AZE99_05680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphg03400
]
AZE99_05680
Enzymes [BR:
sphg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AZE99_05680
DNA repair and recombination proteins [BR:
sphg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AZE99_05680
MMR (mismatch excision repair)
Other MMR factors
AZE99_05680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
AMO73255
UniProt:
A0A127MJC8
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Position
complement(1178550..1180874)
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AA seq
774 aa
AA seq
DB search
MFPNCSPVTDIVNIPNENDPPYVRGLNVPQREAVLTTEGPVLVLAGAGTGKTAALTRRLA
HIVFSRKAWPSEILAVTFTNKAAREMKERIASIVGESFEGMPWLGTFHSIGAKMLRQHAE
LVGLQSNFTILDTDDQLRLLKQMIQAAEIDEKRWPPRMLAGLIDQWKNRGLNPQDLDANE
NERYANGRGQEFYAAYQARLKALNACDFGDLLLHILNLLKTNREILKRYQERFKYILVDE
YQDTNSSQYLWLRLLAQSHQNICCVGDDDQSIYSWRGAEVANILRFEKDFPEATVVKLEQ
NYRSTPHILAAASGLINHNSGRLGKTLWTEETEGDKVQVIGVWDGPEEARRIGDEIESLQ
QLKQVSLNDVAILVRAQFQTREFEDRFISIGMPYKIIGGFRFYERAEIRDALAYLRVITQ
PSDDLAFERIVNTPKRGLGDKTIEKVHRLARAQGIPLAAAALSICDTDELPPRARNTLLE
LMRNFIRWRDMAADTDHAELARVVLDECGYTTMLQADRSTEAAGRLENLTELARAMEEYE
TLGEFLEHVSLVMDNDARDDEAKVTIMTMHGAKGLEYDHVFCVGWEEGVFPSQRSLDEGG
NASLEEERRLAYVAITRAKKKCTIFHAANRRIYGQWNSSIPSRFISELPDDHIEHESSMS
GGESLWRANWSENSDPFAHLAATNATRAGKRGPGWQRAASAPGGFDKNPRVIKEARRSAV
SLGNKGRDDVTVGMRVFHTKFGYGEVKVKEGNKLEIAFEKSGDKRVLDSFVEVA
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgttccctaactgttcacctgtgaccgatatagtcaatataccgaacgagaatgatcct
ccctatgtccgcggcctgaatgtgccgcagcgagaggccgtgctgaccaccgaaggcccg
gtgctggtgctggctggcgctggcacgggcaagaccgctgccctgacccggcggctggcg
catatcgttttctcgcgcaaggcctggccgagcgagattctcgccgtcaccttcaccaac
aaggccgcccgcgagatgaaggagcggattgcgtcgatcgtcggcgagagttttgaaggc
atgccgtggctcggcaccttccacagtatcggcgcgaaaatgctgcgccagcatgccgaa
ctggtcggcctgcagagcaatttcaccatactcgacaccgatgaccagctaaggctgctc
aagcaaatgatccaggccgctgaaatcgacgagaaacgctggccgccgaggatgctggcc
ggcctgatcgaccagtggaagaaccggggtctcaacccgcaggatctcgatgccaacgag
aatgaacgctatgccaatggccgcggacaggaattttacgcagcctatcaggcccggctg
aaggcgctaaacgcatgcgactttggtgacctgctgctccatatcctgaacctgctgaag
accaaccgcgagattttgaaacgctatcaggagcgcttcaaatatatattggtcgacgaa
tatcaggacaccaacagctcgcaatatctgtggctgcggctgctcgcccagagccaccag
aatatctgctgcgtcggcgatgatgaccagtcaatctattcatggcgcggcgcggaagtc
gccaatatcctgcgcttcgagaaggattttcccgaggcgacagtggtcaagctggagcag
aattaccgctccaccccgcatattctcgccgctgcctccggcctgatcaaccataatagc
ggccgcctcggcaagaccctgtggaccgaagaaaccgaaggcgacaaggtacaggtcatc
ggcgtctgggatggcccggaagaagcccggcgcatcggcgatgaaatcgaatcgctgcag
cagctcaagcaagtctcgctcaacgatgtcgcaattcttgtccgcgcccagttccagacc
cgcgagttcgaggaccggttcatctctatcggcatgccgtacaagatcattggcggcttc
cgcttctatgaacgcgccgaaatccgcgacgccctcgcctatctccgcgtgatcacccag
ccctcggatgatctcgctttcgaacggatcgtcaacacgccgaaacgcggtcttggcgac
aagacgatagaaaaagtccaccggcttgcccgcgcgcagggcatccccctcgccgccgct
gcgctcagcatctgcgacaccgacgaactgccgccgcgcgcgcgcaacaccttgctcgaa
ctgatgcgcaatttcatccgctggcgcgacatggccgccgacaccgatcatgccgaactc
gcccgggtcgttctcgacgaatgcggctatacgacgatgctgcaggccgaccgctcgacc
gaagccgctggccgtctggaaaatctgacggaactcgcccgcgcgatggaagaatatgaa
acgctcggcgaatttctcgagcatgtttcgctggtcatggacaatgacgcccgcgacgac
gaggccaaggtcacgatcatgaccatgcacggcgccaagggtctggaatatgatcatgtt
ttctgcgtcggctgggaggaaggcgtgttcccgtcacagcgcagcctcgacgagggcggc
aatgccagcctcgaggaagaacgccgcctcgcctatgtcgcgatcacccgggccaagaaa
aaatgcaccatctttcatgctgccaaccggcgcatctacggccagtggaacagctcgatc
ccgtcacgcttcatcagcgaattgcccgacgaccatatcgagcatgaaagcagcatgagc
ggcggcgaaagcctgtggcgcgccaactggagcgagaatagcgatccgttcgcccatctc
gccgcgacaaatgcaacaagagccggcaaacgcgggcccggctggcaacgcgcagcgtct
gcaccgggcgggttcgacaaaaacccgcgtgttatcaaggaggcccgccgcagcgccgtg
tcgctaggcaacaagggtcgcgatgatgtgaccgtcggcatgcgcgttttccacaccaaa
ttcggctatggcgaagtgaaggtgaaggaaggcaacaagctggaaattgcgttcgagaag
tcgggtgacaaaagggtgctggatagttttgtcgaagtcgcctga
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