Spiroplasma phoeniceum: SDAV_001541
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Entry
SDAV_001541 CDS
T06376
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphh
Spiroplasma phoeniceum
Pathway
sphh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SDAV_001541
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphh03019
]
SDAV_001541
03009 Ribosome biogenesis [BR:
sphh03009
]
SDAV_001541
Enzymes [BR:
sphh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SDAV_001541
Messenger RNA biogenesis [BR:
sphh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SDAV_001541
Ribosome biogenesis [BR:
sphh03009
]
Prokaryotic type
rRNA helicases
SDAV_001541
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
Cas3-like_C_2
P-loop_SecA
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AXF96506
UniProt:
A0A345DQL5
LinkDB
All DBs
Position
complement(1213587..1214921)
Genome browser
AA seq
444 aa
AA seq
DB search
MNFNTLNLYPALQRMIVKMGYTNLTEIQEKAIPVALNNQDIIGKSHTGTGKTVAFILPIL
QNLNTHLKQTQAIILCPTHELATQIIDQVRKLATYLEGVNATLICGGSHIQRQIYALRKS
NIIVGTPGRIADHINRKTLRLDKIKTIVLDEADEMLKMGFKNDLDKVFQNTPKQYQTLLF
SATMSKQVLEIANNYQNNPVEIVVTKNVIEQNNIRQQYVNALSYHKEDVLIALYKHLQPK
RSIIFSNTKVFTNKIAEMLTTNAIPCCVINGDKSRYERAQAMRLFRDGKVQVMVATDVAA
RGIDIDNIDYVINYDIPIERESYIHRIGRTARAGATGVAISIVSKRNDLREIQHLGAYQK
KKIELLDITTYDLKQKPQGTKNISSSNKKATFNQKNNSFKYEYSYLDNKKNQSNAKKKFN
TQGNKKWKQKKQKFDKSNFSFNRI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatacattaaatttatacccagcattacagcgaatgattgttaaaatgggt
tatactaacctaactgaaattcaagaaaaagctattccagtggctcttaataatcaagat
attattggtaaaagtcataccggaactggtaaaactgtagcttttattttgccaatttta
caaaacttaaatacgcacttaaaacaaacacaagcgattattttatgcccaacccatgaa
ttagcgacccaaataattgaccaggttcgaaaattagcaacttacttggaaggtgtaaat
gcaaccttaatttgtggtggttcacatatccaacgtcaaatttatgctttacgaaaaagt
aatattattgtgggaactccgggacgaattgctgatcatattaatcgtaaaacattacga
ttagataaaattaaaacaattgttttagatgaagctgatgaaatgttaaaaatgggattt
aaaaatgatcttgataaagtatttcaaaatactcctaaacaatatcaaacattattattt
tcagcaacaatgtcaaaacaagtattagaaattgctaataactatcaaaataatcctgtt
gaaattgttgttacaaaaaatgttattgaacaaaataatattagacagcaatatgtaaat
gcattgtcttatcataaggaagatgttttaatagcattatataaacatttgcaaccaaaa
cgaagtattattttttcaaatacaaaagtttttactaataaaattgctgaaatgttaaca
actaatgctattccttgttgtgtcattaatggtgataaaagtcgttatgaacgagcgcag
gcaatgcgtttatttcgggatggtaaagtacaagttatggttgccactgatgttgcggca
cgaggaattgatattgataatattgattatgttattaattacgatattccaatagaacga
gaaagttatattcatcggattggaagaacagcacgtgctggtgctactggtgtagcaata
tcaattgtttcaaaacgtaatgatttaagagaaattcaacatttaggtgcatatcaaaag
aaaaaaattgagttattagatattacaacatatgatttaaaacaaaaaccacaaggaaca
aaaaacattagttctagtaataaaaaagcaacttttaatcaaaaaaataatagttttaaa
tatgagtattcatatttagataataaaaagaaccaatctaatgcaaaaaagaaatttaat
acccaaggtaataaaaaatgaaaacaaaaaaaacaaaaatttgataaatctaattttagt
tttaatcgaatttaa
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