Spiroplasma phoeniceum: SDAV_001935
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Entry
SDAV_001935 CDS
T06376
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sphh
Spiroplasma phoeniceum
Pathway
sphh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SDAV_001935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphh03019
]
SDAV_001935
03016 Transfer RNA biogenesis [BR:
sphh03016
]
SDAV_001935
Enzymes [BR:
sphh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SDAV_001935
Messenger RNA biogenesis [BR:
sphh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SDAV_001935
Transfer RNA biogenesis [BR:
sphh03016
]
Prokaryotic type
tRNA degradation factors
SDAV_001935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
SPATA25
S1_RRP5
NtA
Motif
Other DBs
NCBI-ProteinID:
AXF96877
UniProt:
A0A345DRN6
LinkDB
All DBs
Position
complement(1531995..1534103)
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AA seq
702 aa
AA seq
DB search
MAKQVFKKIINNQELIVEHGQLAKQASGSILVRYGDTVVLVTVTVNNKISEGDFFPLTVV
FQEKLYSVGKIPGGFLKREGKPSEYGTLSARVIDRALRPLFSENFRNEVQIVINVLAVDN
DNDVRVVSLFAASLALSISKIPFAGPVAGTLVTFDQNNNIIINPTLEQINNGKMELIVAG
TAEAINMVEAGAKEVSESLMLQAILAGHDVIRQLITFQHEIIEKVGVPKMEVELFQIRSE
IITYVNNNYAKELITAARIKEKTKRYETIEHLVEQAINNYSIPVPLSEKEQKKLTLELKT
ALHNIIRQEVRRQILIDKTRLDGRKLDQIRPLSSEIDILPIVHGSALFTRGETQVLSVVT
LGALGENQIIDGITDEEGKRFMHHYNFPPFSVGETGRMGPPSRREIGHGALGEKALLQII
PSEKVFPYTIRIVSEVLESNGSTSQASICAATLALMAAGVPIIGPVVGIAMGLIKEKNNY
TILTDIQGVEDHLGDMDFKVAGTAKGICALQMDIKIAGINKAILQEALEAAKEARLTILD
NVLATISEPRAHLAPTAPKMKTFMIPVDKIREVIGPSGKMITAIIEKSDDVKIDIEDDGQ
VTIYHRESTAIEKAYQLIKAIVMPVIVGEEIIGPVVKIEKFGVFVNLKENLDGLIHISKL
AKQHVEKAEDIVQLNDIVKVKVIEIDGKGKIKLQLIEILPKK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacaagtatttaaaaaaataataaataatcaggaactaattgttgagcatggc
caattagcaaaacaagcaagtggttcaattttagtacgttatggtgatactgttgtttta
gtaaccgtaacagttaataacaaaattagtgaaggtgatttttttcctttaacagttgtt
tttcaagaaaaattatattcagtcggaaaaattccgggtggatttttaaagcgagaaggg
aagccatctgaatatggtactttatcagcacgagtaattgatcgtgctttacggccatta
ttttcagaaaattttcgtaatgaagttcaaattgttattaatgttcttgctgttgataat
gataatgatgtgcgggtggttagtttatttgcagcatcattagcacttagtatttctaaa
attccatttgctggcccagtagcgggaacattagtaacttttgatcaaaataataatatt
attattaatccaacattagaacaaattaataatggcaaaatggaattaattgttgctgga
acagcggaggcaattaatatggttgaagcgggggcaaaagaagtttctgaaagtttaatg
ttgcaagcaattttagcgggacatgatgttattcgacaattaattacttttcagcatgaa
attattgaaaaagttggggtaccaaaaatggaagttgaattgtttcaaattcgttctgaa
attattacttatgttaataacaattatgcaaaagagttaattacagctgctcgaattaaa
gaaaaaacaaaacgttatgaaacaattgaacatttagttgaacaagcaattaataattat
tctattccagttccactttcagaaaaagaacagaaaaaattaactctagaattaaaaaca
gctttacataatattattcgtcaagaagtgcgtcgccaaattttaattgataaaacacgc
ttagatggccgaaaattagatcaaattcgtccattaagcagtgaaattgatatattacca
attgttcatggtagtgctttgttcactaggggtgaaacacaagttttatcagttgtaaca
ttaggtgcattaggtgaaaatcaaattattgatggaattaccgatgaagaaggtaaacgt
tttatgcatcattataactttccaccattttcagttggtgaaactgggcggatgggtcct
ccttcacgacgagaaattggtcatggcgcattaggagaaaaagcattattacaaattatt
cctagcgaaaaagtgtttccatatacaattcgtattgtttccgaagttttagaatcaaat
ggtagtacttcccaagcatcaatttgtgctgctacattagctctaatggcggctggagtg
ccaattatagggccagtagttgggattgcaatgggtttaattaaagaaaaaaataactat
actattttaactgatattcaaggggtggaagatcatcttggcgatatggactttaaagta
gccggaactgcaaagggaatttgtgccttacaaatggacattaaaattgcaggaattaat
aaggcaattctccaagaagctttagaagcggcaaaagaagcgcggttaacaattttagat
aatgttttagcaactatttctgaaccacgagcacatttagcaccaacagcaccaaaaatg
aaaacatttatgattcctgttgataagattcgggaagttattggtccgagtggtaaaatg
attacagctattattgaaaaatcagatgatgttaaaatcgatattgaggatgatggccaa
gtgacaatttaccatagagaaagcacagcgattgaaaaagcatatcagttaatcaaagca
attgtaatgccagttattgttggtgaagaaataattggaccagttgttaaaattgaaaaa
tttggtgtttttgttaatttaaaagaaaatcttgatggtttaattcatatttctaaatta
gctaaacaacatgttgaaaaagcagaagatattgttcaattaaacgatattgttaaagtt
aaagtaatagaaattgatgggaaagggaaaattaagttacaactaattgaaatattacct
aaaaagtaa
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