Spiroplasma phoeniceum: SDAV_002220
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Entry
SDAV_002220 CDS
T06376
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sphh
Spiroplasma phoeniceum
Pathway
sphh03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SDAV_002220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphh03400
]
SDAV_002220
Enzymes [BR:
sphh01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SDAV_002220
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SDAV_002220
DNA repair and recombination proteins [BR:
sphh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SDAV_002220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
NFACT_N
zf-FPG_IleRS
MCR
Zn_ribbon_6
Ribosomal_S13
Zn_Ribbon_Prim
PSCyt3
Zn_ribbon_IS1595
Motif
Other DBs
NCBI-ProteinID:
AXF97153
UniProt:
A0A345DSG2
LinkDB
All DBs
Position
complement(1755244..1756077)
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AA seq
277 aa
AA seq
DB search
MPELPEVETVRRILTKHVVGKTITDCQIFWNKIIKYPLDSKEFIKKIVKQKINRIDRMGK
HLLFILDDYVLISHLRMEGKYYFTLKDEPGEWQHIMVLFELDHQFQLRYHDTRKFGTMHL
YNKNDYLQQAPLNKLGYEPFDEKITFSYLKNAWQNKSQRIKTTLLEQNVIVGIGNIYANE
ILFASKIHPGERTKNLVDQDYQNIIDNTKLVLQKAIDEGGTTIATYHPEPGMDGKFLQQL
KVHGRNKMECVNCHKLIDKIFVNGRGTYFCNYCQKLK
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagaagttgaaacggtccgtcgtattttaacaaaacatgttgttgga
aaaacaattactgattgtcaaattttttgaaataaaataataaaatatcctcttgattca
aaggaatttataaaaaaaattgttaaacaaaaaattaatcgaattgatcgaatggggaaa
catttactatttatattggatgattatgttttaattagtcatttacgtatggaaggcaaa
tattattttacactaaaagatgaacctggtgaatgacagcatattatggttttatttgaa
cttgatcatcaatttcaattacgttatcatgatacaagaaaatttgggacaatgcattta
tataataaaaatgattatttacaacaagcaccattgaataagttaggatatgaaccattt
gatgaaaaaattacattttcatatttaaaaaatgcttggcaaaataaatcacagcggatt
aaaacaacattattggaacaaaatgttattgttggaattgggaatatttatgccaatgaa
attttatttgcttctaaaattcatcctggtgaaagaacaaaaaatttagttgatcaagat
tatcaaaatattattgacaatacaaaattagttttacaaaaagccattgatgaaggagga
acaaccattgcaacttatcatcctgaaccaggaatggatggtaaatttttacaacaatta
aaagtacatgggcgtaataaaatggaatgtgttaattgccataaattaattgataaaatt
tttgtcaatggacgaggaacttatttttgtaattattgtcaaaaattaaaataa
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