Spiroplasma phoeniceum: SDAV_00566
Help
Entry
SDAV_00566 CDS
T06376
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sphh
Spiroplasma phoeniceum
Brite
KEGG Orthology (KO) [BR:
sphh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SDAV_00566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphh03021
]
SDAV_00566
Transcription machinery [BR:
sphh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SDAV_00566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
PAH_ZNF598
Motif
Other DBs
NCBI-ProteinID:
AXF95557
UniProt:
A0A345DMW9
LinkDB
All DBs
Position
complement(415912..417249)
Genome browser
AA seq
445 aa
AA seq
DB search
MGLSKKEVRDMKSFDEFKEYINKYLEENNNEIEQEKLITLINDHFEVDDNDVEEYFEELV
ANGVEFSDINLEELEENEVPEPIKVTKKQPDEKLRYKVGGISNETKIQDIIKAYFNILGT
SKILTREEEIKYAKMLESSDPEERRFGRDKLITSNLKLVVSVARKHLNRGLDFSDLIEEG
NIGLMKAVDKFDYKRGFKFSTYATWWIRQATTRAIADQARTIRIPVHMVETINKLTRIER
QLTQELGREPSYNEIAEKMGQGMVGEKVREIKRLSIEPVSLEKPIGDEDDTHFGDFVDDK
DIFTPDEYAEKESLREVIDEVFHEILSAREEKVIRMRFGLLPTKLRTVLRLAKECEDETF
PELVQTVKVLDIHYDTPIEKVQSQKNALIDKHLSKYDSPKTLEEVGKEFKVTRERIRQIE
AKTIRKFKPNQANSKAKVLKDFFKG
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgggattatcaaaaaaagaagtcagagatatgaaatcttttgatgaatttaaagaatat
attaataaatatttagaagaaaataacaatgagattgaacaagaaaaattaataacatta
attaatgatcattttgaagttgatgataatgatgttgaagaatatttcgaagaattagtt
gctaatggtgttgaatttagtgatattaatttagaagagttagaagaaaatgaagttcct
gaaccaataaaagtaacgaaaaaacaaccagatgaaaaattacgttacaaagttggtggg
atttcaaatgaaacaaaaattcaagatattattaaagcttactttaatattttgggaaca
agtaagattttaactcgtgaggaagaaattaaatatgctaaaatgttagaatcatctgat
ccagaagaaagacgttttggacgtgataaattaattacttctaacctgaagttagttgtt
tcagttgctcgtaaacatttaaaccggggattagatttttcggatttaattgaagaaggg
aacattgggttaatgaaagctgttgataagtttgattataagcgtggttttaaattttca
acatatgccacatgatgaattagacaagcaacaacccgggcaattgctgatcaagcgcga
acaattcggattcctgttcatatggttgaaacaattaataaattaacaagaattgaacgg
caattaacacaagagttaggacgcgaaccaagttacaatgaaattgctgaaaaaatgggg
caaggaatggttggcgaaaaagttcgtgaaattaagagactatcaattgaaccagtttca
ttagaaaaaccaattggtgatgaggatgatactcattttggtgattttgttgatgataaa
gatatttttacaccggatgaatatgctgaaaaagaatcattacgagaagtaattgatgaa
gttttccatgaaattttatcagcacgagaagaaaaagtaattagaatgcggtttggactt
ttaccaacaaagttacgaacagtattacggttagcaaaagaatgtgaagatgaaactttc
cccgaattagttcaaacagttaaagttcttgatattcattatgatacaccaattgaaaaa
gtacaaagtcaaaaaaatgctttaattgataagcatttatcaaaatatgattcaccaaaa
acattagaagaagtaggcaaagaatttaaagtaacacgtgaacgaattcgccaaattgaa
gcaaaaacaattcgtaagtttaagccaaaccaagctaattcgaaagcaaaagtattaaaa
gacttttttaaaggatag
DBGET
integrated database retrieval system
