Spiroplasma phoeniceum: SDAV_00820
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Entry
SDAV_00820 CDS
T06376
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphh
Spiroplasma phoeniceum
Pathway
sphh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SDAV_00820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphh03021
]
SDAV_00820
03400 DNA repair and recombination proteins [BR:
sphh03400
]
SDAV_00820
Enzymes [BR:
sphh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SDAV_00820
Transcription machinery [BR:
sphh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SDAV_00820
DNA repair and recombination proteins [BR:
sphh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SDAV_00820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
HHH_5
ATG14
Motif
Other DBs
NCBI-ProteinID:
AXF95803
UniProt:
A0A345DNL5
LinkDB
All DBs
Position
complement(620613..621566)
Genome browser
AA seq
317 aa
AA seq
DB search
MKQFIRPEFKLQAEDKANNYGKFLVEPLERGFGVTLGNAIRRTLLSATPGAAVFAVRIKG
ASHEFTAIPGVVEHVTKIILNIKNLVLKINQDIIPDGESVILKVVSSKEGEIYARDLVVP
TGVEVINGDLLLATIAKGGELELELHARNSRGYKSFTDNKKEKKYADLIVIDSNYCPIQR
VAYNVEPTKVGKNADLEKLELEIQTDSSITPVNAVAMAAKVITEHLEFFVNLNEAIKATQ
IISSEAEAEEDELDRSIDELEFTQRSQNCLKRAKIDTLRDLISKSEDEIQEIRNLGKKSL
TEIKDKVAQLGLHFRRD
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatttattagaccagaatttaaattacaagcagaagataaagccaataattac
ggaaaatttttagttgaaccgttagaacgaggatttggtgttacattaggaaatgcgata
cgtcgaacattactatcagcaacaccaggagccgctgtttttgctgttcgaattaaaggt
gcctcgcatgaatttactgctattccgggagttgttgaacatgttacaaaaataatttta
aatattaaaaatttagtattaaaaattaatcaagatattattccagatggagaatcagta
attttaaaagtagtttcttcaaaagaaggagaaatttatgcaagagatttagttgtccca
actggagtagaagttatcaatggtgatttattattagcaacaattgctaaaggtggagaa
ttagaattggagttacatgctcgtaattcacgtgggtataaatcatttacagataataaa
aaagaaaaaaaatatgctgatttaattgtaattgattcaaattattgtccaattcagcgt
gtggcatataatgttgaaccaacaaaggtgggaaaaaatgctgacttagaaaaattagaa
ttagaaattcaaactgatagttcaattacgccagttaacgctgttgcaatggcggcaaaa
gttattactgagcatttagaattctttgttaacttgaatgaagcaattaaagcaacccaa
attatctcatctgaagcagaagcggaagaagatgaattagatcgtagcattgatgaacta
gagtttacgcaacgttcacaaaattgcttaaaaagagcaaaaattgatactttacgtgat
ttaatttcaaaatcagaagatgaaattcaagaaattagaaacttagggaaaaaatcatta
acagaaattaaagacaaagtggcccaattaggtttacactttcgacgtgattaa
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