Sphingomonas hengshuiensis: TS85_06020
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Entry
TS85_06020 CDS
T03848
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03030
DNA replication
sphi03430
Mismatch repair
sphi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TS85_06020
03430 Mismatch repair
TS85_06020
03440 Homologous recombination
TS85_06020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphi03032
]
TS85_06020
03400 DNA repair and recombination proteins [BR:
sphi03400
]
TS85_06020
Enzymes [BR:
sphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TS85_06020
DNA replication proteins [BR:
sphi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TS85_06020
DNA repair and recombination proteins [BR:
sphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TS85_06020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
HHH_3
Motif
Other DBs
NCBI-ProteinID:
AJP71426
UniProt:
A0A7U4J713
LinkDB
All DBs
Position
1375052..1378531
Genome browser
AA seq
1159 aa
AA seq
DB search
MAHSGFVPLRVFSSYTMLEGAIEPKAIAKRARELGFPAVAVSDRNGLYAAMPFSDACKKA
GVQPIVGTLLAVKRPDLPDGVATQVDWLALYAQDEAGYTNLCNLVSMAHLDRPIEEDAHV
TFEALAGRTDGLIALTAGADGGLARLYAEGQDAAAEAYAARLEALFPDRLYIEIVRRLNE
VEGRAEAKLLDYAYARDLPLVGTNPCCFAEETFHEAHDAMLCIANSSYIASDDRPRSSPD
AWMKPATEMRALFADLPEAIANTLVVAQRCAVSAPKRKPILPSLAGDREGEARMLREQSL
AGLDMRLEKAGITDAEQRRLYAERLEFELDVIIQMGFPGYFLIVADFIKWAKAHDIPVGP
GRGSGAGSVVAWVLTITDLDPLKLGLLFERFLNPERVSMPDFDIDFCETRRGEVIRYVQQ
KYGSDHVAQIITFGTMKARAVLKDVGRVLQMSYGQVDRLAKQIPNLPADPWTLERTLNGV
SEFHNEYKTDTGVRHLIDLSMRLEGLPRHSSTHAAGVVIGDRPLAELVPLYRDPRSDMPV
TQFDMKYVEGAGLVKFDFLGLKTLSVLKKAVELIGDRGIEVDLDTLGWDDHEVYDLLQRG
DTVGVFQLESEGMRRTLTAVRPTNFGDIIALVSLYRPGPMDNIPSFGHRKAGREEIIYPH
DLLEPILNETYGIFVYQEQVMQAAQILAGYSLGGADMLRRAMGKKIKAEMDTQRAIFVEG
CARVNGIKQAKANELFDLIDKFAGYGFNKSHAAAYALLAYQTAWLKAHYPHEFFAASMAY
DIHQTDKLAIFADDMRRLGIECLPPDINFSLADFNVEKHGEGYAVRYALGALKGVGERAM
ELLVEERDTNGRFRSVDDFAKRVDPRLLNKRQVETLTAAGAFDAIEPNRAALFAAAETVL
AVAQRTQESRTSGQGGLFGESEPGGGAVQLSAKAHWSMADRTSAEKDAFGYYFSAHPLDR
YAHLARTHGARDIATLGEVPVPEGGRVGATIAALIEDARWRTSARGNRYLMATISDTSGQ
CPTSCFDEPVAKEMEEVARAGGCAILTVELDKRPGEDTPRIAIKRVQPFETLAGTARLLL
DLHVDDAAAIPRIAEVIGGLRGGRSTVRLWVPYGASGQAEVVLGRNFLIDEELVGKIGTL
PGIRAAEFGRPEVTLAAAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggcgcattcgggtttcgtaccgcttcgggttttctcttcctacacgatgctggaaggc
gcgatcgagcccaaggcgatcgccaagcgtgcgcgcgaactgggctttccggcggtcgcg
gtcagcgatcgcaacgggctctacgccgcgatgcccttttccgatgcgtgcaaaaaggcg
ggggtccagccgatcgtcggcacgctgctcgcggtcaagcgccccgacctgcccgatggc
gtcgcgactcaagtcgactggctcgcgctctatgcgcaggacgaggcgggctacaccaat
ttgtgcaacctcgtgtcgatggcgcatctcgatcgcccgatcgaggaagacgcgcatgtc
acgttcgaggcgctggcggggcgcaccgacgggctgatcgcgctgaccgccggcgccgat
ggcgggctcgcgcggctctatgccgaggggcaggacgccgcggcggaggcctatgccgcg
cggctggaggcgctgttccccgaccggctctatatcgagatcgtccgccgcctgaacgaa
gtcgaggggcgcgccgaggccaagctgctcgactatgcctatgcccgcgatctcccgctg
gtcggcaccaatccgtgctgcttcgccgaggagaccttccacgaggcgcatgacgcgatg
ctgtgcatcgccaattcgtcgtacatcgccagcgacgatcgcccgcgcagctcgcccgac
gcctggatgaagcccgcgaccgagatgcgcgcgctgttcgccgatctgcccgaggcgatc
gcgaacacgctggtcgtggcgcagcgctgcgcagtgtcggcgcccaagcgcaagccgatc
ctccccagcctcgcgggtgaccgcgagggtgaggcgcggatgctgcgcgaacaatcgctg
gcggggctcgacatgcggctggaaaaggccgggatcaccgacgccgagcagcgcaggctc
tatgccgagcggctcgaattcgaactcgacgtcatcattcagatggggttccccggttac
ttcctgatcgtcgccgacttcatcaaatgggcgaaggcgcacgatattccggtggggccg
gggcgtggttcgggcgcgggttcggtcgtcgcctgggtgctgacgatcaccgatctcgat
ccgctcaagctcgggctgctgttcgaacgcttcctcaaccccgaacgcgtgtcgatgccc
gacttcgacatcgatttctgcgaaacgcggcgcggcgaagtcatccgctacgtccagcag
aaatacgggtcggaccatgtcgcgcagatcatcaccttcgggacgatgaaggcgcgcgcg
gtgctcaaggatgtcgggcgcgtgctccagatgagctatggccaggtcgatcgcctcgcc
aagcagatcccgaacctccccgccgatccctggacgctggaacgcacgctcaacggcgtc
agcgagtttcacaacgagtataagaccgacaccggcgtccgccacctgatcgacctgtcg
atgcggctggaggggctgccgcgccacagctcgacccacgcggcgggcgtcgtgatcggc
gatcgtccgctcgcggagctggtcccgctgtaccgcgatccgcgctcggacatgcccgtc
acccagttcgacatgaaatatgtcgagggcgccggcctggtgaaattcgactttctcggc
ctcaagacgctgtcggtgctcaagaaggccgtcgagctgatcggcgaccgcgggatcgaa
gtcgatctcgacacgctcggatgggacgatcacgaagtctatgacctgctccagcgcggc
gacacggtcggcgtgttccagctcgaatcggagggcatgcgccgcacgctgaccgcggtg
cgcccaaccaatttcggcgacatcatcgcgctcgtctcgctctatcgtccgggcccgatg
gacaacatccccagcttcggccaccgcaaggcggggcgcgaggagatcatctatccgcac
gacctgctcgagccgatcctgaacgaaacctacgggattttcgtctatcaggaacaggtg
atgcaggccgcgcagatcctcgcgggctattcgctgggcggcgccgacatgctccgccgc
gcgatgggcaagaagatcaaggcggagatggacacccagcgcgcgatcttcgtcgaaggc
tgcgcgcgggtgaacgggatcaagcaggccaaggcgaacgaactgttcgacttgatcgac
aagttcgccggctacggcttcaacaaatcgcacgccgccgcctatgcgctgctcgcctat
cagacggcgtggctgaaggcgcattacccgcacgaattcttcgccgcgtcgatggcctat
gacatccaccagaccgacaagctggcgatcttcgccgacgatatgcgccggctggggatc
gaatgcctgccgcccgacatcaacttcagcctcgccgacttcaacgtcgagaagcatggc
gagggctatgcggtccgctatgcgctcggcgcgctgaagggcgtcggcgagcgcgcgatg
gaattgctggtcgaggaacgcgacaccaatggccgtttccgctcggtcgacgatttcgcc
aagcgcgtcgatccgcggctgctcaacaagcgccaggtcgagacgctgaccgcggcgggg
gcgttcgacgcgatcgagcccaatcgtgccgcgctgttcgctgcggcggagaccgtgctg
gcggtggcgcagcgcacgcaggagagccggacgagcgggcagggcgggctgttcggcgag
tccgaacccggcggcggcgcggtccagctttcggccaaggcgcattggtcgatggccgat
cgcacctcggcggaaaaggacgcgttcggctattatttctcggcgcacccgctcgatcgc
tacgcgcatctcgcgcgcacgcacggcgcccgcgacatcgcgacgctgggcgaggttccg
gtgcccgagggaggccgcgtcggcgcgacgatcgccgcgctgatcgaggatgcgcgctgg
cgcacctcggcgcgcggcaatcgctatctgatggcgacgatttccgacaccagcgggcaa
tgcccgaccagttgcttcgacgagccggtcgcgaaggaaatggaggaggtcgcccgcgcc
ggcggctgcgcgattctcaccgtcgagctcgacaagcgcccgggcgaggatacgccgcgc
atcgcgatcaagcgcgtccagccgttcgagacgctggcggggacggcccgcctgctgctc
gacctccatgtcgacgatgccgccgcgatcccgcgcatcgccgaggtgatcggcgggctg
cgcggcgggcgcagcaccgtgcggctctgggtgccctatggcgcatcggggcaggcggag
gtcgtgctcggccggaatttcctgatcgacgaagagcttgtcggcaagatcgggacgctg
cccggcatccgcgccgccgaattcggcaggcccgaagtgacgctcgccgccgccgcatga
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