Sphingomonas hengshuiensis: TS85_08660
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Entry
TS85_08660 CDS
T03848
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TS85_08660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphi03400
]
TS85_08660
Enzymes [BR:
sphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TS85_08660
DNA repair and recombination proteins [BR:
sphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TS85_08660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
Cas3-like_C_2
AAA_30
SecA_DEAD
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AJP71837
UniProt:
A0A7U4J7S7
LinkDB
All DBs
Position
1977827..1981282
Genome browser
AA seq
1151 aa
AA seq
DB search
MPDLKTILKAAKPLTLAGAPTGFLPWMLADLARASGVAVFIAPDEAEMRAIASTAPYFAP
DLDVLAYPAWDCLPYDRASPTLRVMAERLATLHALQAKAKGPRLLVTTVNAATQRTLTPF
RIRQLIARLAPGERISLDRLATLLQANGYHRVDTVADAGEFAVRGGLVDLFPSGAEQALR
LDFFGDEIETVRTFDPQDQRTTGRVDGFALLPASEALLDEESVKRFRARYREKFGANATA
DPLYQAISDGRRLAGMEHWLPLFEDRLATLFDHLPDGCVVLRDTGTQGAGTQRFEAIADY
QQNRARAESTAPGSYRPLDTTALYLSPDEWATAQDAVPVHVTTSFHEPESATVLDFAVDG
PRDFAPERAASANVYDAVVDHLGKLRKAGQKPILASYSNGARERLSGLLKDHGLKSLVAV
ESWQEALGAADKSVALIVLPLDHGFSAPGVAVLTEQDMLGDRLVRRAKRRKNTDAFLQEL
ATLSPGDLVVHVDHGIGRYEGLTQIPVQKAPHDCVALSYAGGDKLFVPVENLEVLSRYGA
GEEGATLDKLGGEAWQRRKSKMKERIREIAGELIATAAKRATRPADVAEPDHGGYPAFVD
RFPYEETDDQDRAINDVLEDLAAGRPMDRLIVGDVGFGKTEVALRAAFVAAMAGMQVAVV
CPTTLLARQHHRNFVERFQGFPLEVGRLSRLVPAAEAKAVRDGLTAGTIDIVIGTHAILS
KTVDFKRLGLVIVDEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMSGLRELSV
IQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQAYFVTPRISDLPDIEKFLREDVPE
ISYVVAHGQMAPTEVEERMSAFYDRRYDLLISTTIIESGLDIPSANTLIVNRADKFGLAQ
LYQIRGRVGRAKTRAYAYMTTPPERQMSEAAAKRLKVLSDLESLGAGFQLASHDLDIRGA
GNLLGDEQSGHIKEVGYELYQSMLEEAIMDAKAGGIRDERPKDLSPSITVDAPILIPEDY
VPDLDLRMGLYRRLNEIEDSDGIEGFAAEMIDRFGKLPEATENLLQLIEAKLNAKKACIA
KIDVGPKGALVTFHEDKFPNVAGLMAYVDRLNGTARLRPDMRLVVTREWNNPRSRLNAAL
QISRGLAKAAG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatctcaagacgatcctcaaagccgcgaagccgctgacgctggcgggtgcgccc
accggcttcctgccgtggatgctcgccgatctggcgcgggcgagcggtgtcgcggtgttc
atcgcgcccgacgaggcggagatgcgcgcgatcgcatcgacggcgccctatttcgcgccc
gacctcgacgtgctcgcctatccggcatgggattgcctgccctatgaccgcgccagcccg
acgctgcgcgtcatggccgagcgcctcgcgacgctccacgcgctccaggccaaggcaaag
gggccgcggctgctcgtcaccaccgtcaacgcggcgactcagcgcacgctgaccccgttc
cgcatccgccagttgatcgcacgcctcgcgcccggcgagcgcatctcgctcgatcggctg
gcgactttgctccaggcgaacggataccaccgagtcgacaccgtcgccgatgcgggcgag
ttcgcggtgcgcggcgggctggtcgatctgtttccttcgggcgccgaacaggcgttgcgg
ctcgatttcttcggcgacgagatcgagaccgtccgcaccttcgatccgcaggaccagcgc
accacgggccgcgtcgacggcttcgcgctgctgcccgccagcgaggcgttgctcgacgag
gaaagcgtcaagcgcttccgcgcgcgctatcgcgagaaattcggcgccaacgccaccgcc
gatccgctgtaccaggcgatcagcgacgggcggcggctggccgggatggagcattggctg
ccgctgttcgaggatcggctggcgacgctgttcgaccatctgcccgatggctgcgtggtg
ctgcgcgacacggggacgcagggtgcgggcacccagcgtttcgaggcgatcgccgattac
cagcagaaccgcgcccgcgctgaatcgaccgcaccgggcagctatcgcccgctcgacacc
accgccttgtacctgagccccgacgaatgggcgacggcgcaggatgcggtgcccgtgcat
gtgacgaccagcttccacgagccggaaagcgccaccgtcctcgacttcgccgtcgacggc
ccgcgcgacttcgcgcccgagcgcgcggcgagcgccaatgtctacgatgcggtcgtagac
catctcggcaagctgcggaaagcggggcagaaaccgatcctcgccagctattcgaacggc
gcgcgcgagcggctttcggggctgctcaaggatcacggcctgaaatcgctcgtcgcggtc
gaaagctggcaggaggcgctgggcgctgccgacaagagcgtcgccctgatcgtcctgccg
ctcgaccatggcttcagtgcccccggcgtcgcggtgctgaccgaacaggacatgctgggc
gaccggctggttcgccgggccaagcggcgcaagaataccgatgcgttcctccaggaactc
gccaccctctcccccggcgatctggtcgtccatgtcgatcacggcatcggccgctatgag
gggctgacgcagattccggtgcagaaagcgccgcacgattgcgtcgcgctgagctatgcc
gggggcgacaagctgttcgtgccggtcgagaatctcgaggtgctcagccgctatggcgcg
ggcgaggaaggcgcgacgctcgacaagctgggcggcgaggcgtggcagcggcgcaaatcg
aagatgaaggagcgcatccgcgaaatcgcgggcgaactcatcgcgaccgccgccaagcgc
gcgacgcgccccgccgatgtcgccgagcccgatcatggcggctaccccgcctttgtcgat
cgcttcccctatgaggagaccgacgaccaggatcgcgcgatcaacgacgtgctggaggat
ctcgccgcggggcgcccgatggaccggctgatcgtcggcgatgtcggcttcggcaagacc
gaggtcgcgttgcgcgccgcgttcgtcgcggcgatggcggggatgcaggtcgcggtggta
tgccccaccaccctcctcgcccgccagcaccaccgcaatttcgtcgagcgattccagggc
ttcccgctcgaagtcggccgcctctcgcgcctcgtccccgctgccgaggcaaaggcggtg
cgcgacgggctgaccgcgggcacgatcgacatcgtgatcggcacccacgcgatcctgtcc
aagaccgtcgatttcaagcggctcggcctcgtcatcgtcgatgaggagcagcggttcggc
gtgacgcacaaggaacggctcaaggcgatgaaggccgatgtccacgtcctgacgctcacc
gccacgccgatcccgcgcacgctccagatggcgatgtcgggcctgcgcgaattgtcggtg
atccagaccccaccggtcgatcggctcgcggtgcgcacctatgtcatgccgtgggacccg
gtggtgctgcgcgaggcgttgctgcgcgagcattatcgcggcggccaggcctatttcgtc
accccccgcatctccgacctgcccgatatcgagaaattcctgcgcgaggacgtgcccgag
atcagctatgtcgtcgcacacggccagatggcgccgaccgaagtcgaggagcggatgtcc
gccttctacgatcgccgctacgacctgctgatctcgacgacgatcatcgagagcgggctc
gacatccccagcgccaacacgctgatcgtcaaccgcgccgacaagttcggcctcgcgcag
ctctaccagattcgcgggcgcgtgggccgggcgaagacccgcgcctatgcctatatgacc
accccgcccgagcgccagatgagcgaggcggcggccaagcggctcaaggtgctgtccgac
ctcgaatcgctcggcgccgggttccagcttgccagccacgacctcgacattcgcggcgcg
ggcaatctgctcggcgacgagcaatcggggcatatcaaggaagtcggctacgaactctac
cagtcgatgctggaagaggcgatcatggacgccaaggctggcggcatccgcgacgaacgc
cccaaggacctgtcgccgtcgatcaccgtcgacgcgccgatcctgatccccgaggactat
gtccccgatctcgacctgcgcatggggctgtaccgccgcctgaacgagatcgaggacagc
gacggcatcgaagggttcgccgcggaaatgatcgaccgtttcggcaagctgcccgaggcg
accgagaatttgctgcaactgatcgaggccaagctgaacgcgaaaaaggcgtgcatcgcc
aagatcgacgtggggccaaagggtgcgctggtcaccttccacgaggataaattccccaat
gtcgcggggctgatggcctatgtcgatcggctgaacggcactgcgcggctgcgtccggac
atgcggctggtggtgacgcgcgagtggaacaacccgcggtcgcggctcaacgcggcgctc
cagatttcgcgcgggctggccaaggcggcgggctga
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