Sphingomonas hengshuiensis: TS85_10550
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Entry
TS85_10550 CDS
T03848
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TS85_10550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphi03021
]
TS85_10550
03400 DNA repair and recombination proteins [BR:
sphi03400
]
TS85_10550
Enzymes [BR:
sphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TS85_10550
Transcription machinery [BR:
sphi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TS85_10550
DNA repair and recombination proteins [BR:
sphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TS85_10550
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
B
Motif
Other DBs
NCBI-ProteinID:
AJP72130
UniProt:
A0A7U4J8C8
LinkDB
All DBs
Position
2412370..2416527
Genome browser
AA seq
1385 aa
AA seq
DB search
MATKAIDGTGTLKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTL
RSVFPIRDFAGTAELDFVNYELEPPKFDVEECRQRGITYAAPMRVTLRLIVFEVDPDTEA
RSVLDIKEQDVYMGDMPLMTGNGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYL
FAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNSEDILNYFYNRVTYV
RGPNGWQIPFQAENWRGQKPMYDIVDALSGEIVFASGQKISPRAANKAAKDGLTTLLIPT
EEIFGRYSAFDLINEATGEIYIEAGDEVSAENLEMLDKAGIDQLELLDIDHIATGPWIRN
TLKVDKAEEREQALSDIYRVMRPGEPPTLETAESLFSGLFFDPERYDLSAVGRVKLNMRL
DLDVEDTVTTLRTEDILEVVKTLVNLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLL
RMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRR
VSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLASFSRVNKYGFIET
PYRKIIDGKVTNDVVYLSAMEEAKHTIAQASAELDEEGRFTEELVSSRQAGEFLMALPDQ
VTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVA
RDSGAAIAARRSGVVDQVDATRIVIRASGDVEATQSGVDIYTLMKFQRSNQSTCINQRPL
VKVGETVNAGDIIADGPSTEFGELALGRNALVAFMPWNGYNYEDSILISERIVKDDVFTS
IHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPK
GESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVTGTIVDVRVFNRHGIDKDERAMAIER
EEIERLKKDSDDERNILNRATWSRLKEMLLGQVATGAPKGVKKGSTIDADLLDSVDRHEW
WKFAVQDDAMQSNLEAVKVQYDEAVKRITDKFHDRRDKLERGDELPPGVLKMVKVFVAVK
RKLQPGDKMAGRHGNKGVISRILPAEDMPFLADGTPVDLVLNPLGVPSRMNVGQIFETHL
GWAARNLGMQVSAMLEDWREANPEAQPGTMPEPVKERLKEIYGGHYIDEIEARDAGQIIE
LANNTRTGIPMGTPVFDGAREADVSAMLELAGLESSGQSTLYDGRTGEAFDRKVTVGIIY
MLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEML
TVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKTDEPGYDTDGV
QIAAE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atggctaccaaagcaatcgacggaacgggcacgctcaagcgccgcatccgcaaggtgttc
ggcgacatccacgaagtggtgcagatgccgaacctgatcgaggttcagcgcgaatcctac
gaacagttcctgcgcagcgatccttcgatcggctatgtctccgggctggaaaagacgctg
cgttcggtcttcccgatccgcgacttcgccggcaccgccgagctcgacttcgtcaattac
gagctggagccccccaagttcgacgtcgaggaatgccgtcagcgcggcatcacctatgcg
gcgccgatgcgcgttaccctccgcctgatcgtgttcgaggtcgatcccgatacggaagcc
cggtcggtgctcgatatcaaggagcaggacgtctatatgggcgacatgccgctgatgacg
gggaacggcacgttcttcatcaacggcaccgagcgcgtgatcgtcagccagatgcaccgt
tcgccgggcgtgctgttcgaccatgatcgcggcaagacccacgcatcgggcaagtatctg
ttcgcggcgcgcgtgatcccgtatcgtggctcgtggctcgatttcgagttcgacgcgaag
gacatcgtcaacgtccgcatcgatcgcaagcgcaagctgccggtcacgacgctgctctat
gccctcggcctgaacagcgaggacatcctcaactatttctacaaccgcgtgacctatgtc
cgcggcccgaacggctggcagatccccttccaggccgaaaactggcgcggccagaagccg
atgtacgacatcgtcgatgcgctgtcgggcgagatcgtgttcgcgtcggggcagaagatt
tcgccccgcgccgcgaacaaggctgccaaggacgggctgaccacgctgctgatcccgacc
gaggaaatcttcggtcgctacagcgcgttcgacctgatcaacgaggcgaccggcgaaatc
tatatcgaagccggcgacgaagtctcggctgagaacctcgaaatgctcgacaaggccgga
atcgaccagctcgagctgctcgacatcgatcacatcgccacgggtccgtggatccgcaac
acgctcaaggtcgacaaggcagaagagcgcgagcaggcgctgtccgacatttatcgcgtg
atgcgccccggcgagccgccgacgctggaaaccgcggagtcgctgttctcgggcctgttc
ttcgatcccgagcgctacgacctgtcggctgttggccgcgtcaagctcaacatgcgcctc
gacctcgacgtcgaggacacggtgacgacgctgcgcaccgaggatattctcgaagtcgtc
aagacgctcgtgaacctcaaggacggcaagggcgaagtcgacgacatcgacaacctcggc
aaccgtcgtgtgcgttcggtgggcgagctgctggagaaccagtatcgcgtcggcctgctc
cgcatggagcgcgccgtgaaggagcgcatgtcgtcggtcgatgtgtcgaccgtgatgcca
aacgacctgatcaacgcgaagcccgcggtcgctgcggtgcgcgaattcttcggttcgtcg
cagctctcgcagttcatggatcagaccaacccgctgtcggaagttacccacaagcgccgc
gtgtcggcacttggaccgggtggtctgacgcgtgagcgcgcgggcttcgaagtccgcgac
gttcatccgacgcattatggccgcatctgcccgatcgaaacgccggaaggcccgaacatc
ggtctgatcaactcgctggcgtcgttcagccgggtgaacaaatacggcttcatcgaaacg
ccgtaccgcaagatcatcgacggcaaggtgaccaacgacgtcgtctatctgtcggcgatg
gaagaggccaagcacacgatcgcgcaggcctctgccgagctcgacgaggaaggccgcttc
accgaggaactggtgtcctcgcgtcaggcgggcgaattcctgatggcgctgcccgaccag
gtcacgctgatggacgtcagccccaagcagctcgtctcggtcgccgcatcgctcattccg
ttcctggaaaacgatgacgccaaccgcgcgctgatgggctcgaacatgcagcgtcaggcc
gtgccgctggtgaaggcggaagcgcccttcgtcgggaccggcatggaagaaaccgtcgcg
cgtgactccggcgccgccatcgcggcccgccgttcgggcgtggtcgatcaggtcgacgcg
acccgtatcgtcatccgcgcctcgggcgatgtcgaagccacgcagagcggcgtcgacatc
tacacgctgatgaagttccagcgctcgaaccagtcgacctgcatcaaccagcgtccgctg
gtgaaggtgggcgagaccgtcaatgccggcgacatcatcgccgacggcccgtcgaccgag
ttcggcgagctggcgctgggccgcaatgcgctcgtcgcgttcatgccctggaacggctat
aactatgaggattcgatcctcatcagcgagcggatcgtgaaggacgacgtgttcacgtcg
atccatatcgacgagttcgaagtgatggcccgcgacaccaagctggggccggaggacatc
acccgcgacatcccgaacgtcggcgaggaggcactgcgcaacctcgacgaggccggcatc
gtctatatcggcgccgaagtggagccgggcgacatcctggtcggcaagatcacccccaag
ggtgaatcgccgatgacgccggaggaaaagctcctccgcgccatcttcggcgaaaaggcc
agcgacgtgcgcgacacctcgctccgcctgccgccgggcgttaccgggacgatcgtcgac
gtgcgcgtcttcaatcgccacggcatcgacaaggacgagcgcgcgatggcgatcgagcgc
gaagagatcgagcgcctgaagaaggacagcgacgacgagcgcaacatcctcaaccgcgcc
acctggtcgcgcctgaaggaaatgctgctcggccaggtcgcgaccggcgcgccgaagggc
gtcaagaagggctcgacgatcgacgccgacctgctcgactcggtcgaccgccacgaatgg
tggaagttcgcggtgcaggacgacgcaatgcagtcgaacctcgaagccgtgaaggtccag
tatgacgaggcggtgaagcgcatcaccgacaagttccacgatcgtcgcgacaagctggag
cgtggcgacgagctgccgccgggcgtgctcaagatggtcaaggtcttcgtcgcggtgaag
cgcaagctgcagccgggcgacaagatggccggccgtcacggcaacaagggcgtgatctcg
cgcatcctgccggcggaggacatgccgttcctcgccgacggtacgccggtcgacctcgtg
ctcaacccgctgggcgtgccttcgcgcatgaacgtcgggcagatcttcgagacgcatctt
ggctgggccgcccgcaatttgggcatgcaggtctcggcgatgctggaggattggcgcgaa
gccaaccccgaggcacagccgggcacgatgcccgagccggtcaaggagcgcctgaaggag
atctacggcggtcactatatcgacgagatcgaagcacgcgacgcgggccagatcatcgag
ctggcgaacaacacccgcacgggcattccgatgggcaccccggtgttcgacggcgcgcgc
gaagccgatgtgtcggcgatgctggaactggcaggcctcgaatcctcgggccagtcgacg
ctctatgacggtcgcaccggcgaggcgttcgatcgcaaggtgacggtgggcatcatctac
atgctcaagctccaccaccttgtggacgacaagatccacgcccgctcgatcgggccgtac
agcctcgtcacccagcagccgctgggcggtaaggcgcagttcggcggacagcgcttcggc
gaaatggaagtgtgggcgctccaggcgtatggcgcggcgtacacgctccaggaaatgctg
acggtgaagtcggacgacgtggtcgggcgcaccaaggtctatgaagcgatcgtcaagggc
gacgacacgttcgaggccggcattccagagagcttcaacgtgctcgtcaaggaaatgcgc
tcgctgggcctcaacgtcgagttgaagaccgacgagccgggctacgacaccgacggcgtc
cagatcgcggcggagtaa
DBGET
integrated database retrieval system
