Sphingomonas hengshuiensis: TS85_11995
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Entry
TS85_11995 CDS
T03848
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TS85_11995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphi03019
]
TS85_11995
03009 Ribosome biogenesis [BR:
sphi03009
]
TS85_11995
Enzymes [BR:
sphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TS85_11995
Messenger RNA biogenesis [BR:
sphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TS85_11995
Ribosome biogenesis [BR:
sphi03009
]
Prokaryotic type
rRNA helicases
TS85_11995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJP72350
UniProt:
A0A7U4LFE4
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All DBs
Position
2709575..2711389
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AA seq
604 aa
AA seq
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MPFSSLPALLAEALAARGYAAPTPVQAAVLEPEALGRDLVVSAQTGSGKTVAFGLAMAGD
LLGEDGRVIPTREPHALIIAPTRELALQVSRELIWLYGPTGARIATCVGGMDASKERRQL
NMGAHIVVGTPGRLRDHLERGALDLSALKAAVLDEADEMLDMGFREDLEEILDATPNTRR
TLLFSATMPKPIVMLAKRYQKDALRITTVGEDRGHGDISYQAVTVSPSDIEHSVINLLRF
HEAETAMLFCATRDNVRHLHATLVERGFAAVALSGEHSQNERNQALQALRDRRARVCVAT
DVASRGIDLPSLSLVVHVELPRDAETLQHRSGRTGRAGKKGTAVLIVPYPRRRRVEAMLR
GARINADWIDAPTADQIRANDRERLLAALLAPIEVDEEDAALAERLLAEKTPQEIAAALV
HAHRAAMPQPEEMAEQTPEARRAAQAERHRPGFEDVVWFRMDIGRRQNADPRWVLPLICR
RGALTKNDIGAIRIGPNETMFQVPRAIASKFAAAVAKTAEADEDVRIEAAPDGPPQHDGP
RGHDGPRPQRNGPNRSGPPRSGPGGPPRGRPGADGPGGGGGAPYRSNVGAPHKARPFRKG
PPRG
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgccattttcatccctccccgcgcttctcgccgaagcgctcgccgcgcgtggttatgcc
gcgcccacgcctgtccaggccgctgtccttgaacccgaggcgcttggacgcgatctcgtc
gtctccgcccagactgggtcggggaagacggttgcgttcgggcttgccatggccggggat
ttgctgggcgaggatggccgcgtcatccccacccgtgagccccatgcgctgatcatcgcc
ccgacgcgcgaactcgcgcttcaggtcagccgcgagctgatctggctctatggccccacc
ggcgcgcgcatcgcgacctgcgtgggcgggatggatgcgtcaaaggagcgccgccagctc
aacatgggcgcgcacatcgtcgtcggcacgccaggccgcctgcgcgaccatctggagcgc
ggcgcgctcgacctgtcggcgctcaaggccgcggtgctcgacgaagccgatgagatgctc
gacatgggcttccgcgaggatctggaggagatcctcgacgcgacgcccaatacgcggcgc
accctgctgttctcggcaacgatgcccaagccgatcgtgatgctcgccaagcgctaccag
aaggatgcgctgcgcatcacgacggtaggcgaggatcgcggccatggcgacatcagctac
caggccgtcaccgtcagcccgtccgacatcgagcattcggtgatcaacctgctgcgcttc
cacgaggcggagacggcgatgctgttctgcgccacgcgcgacaatgtccgccacctccac
gccacgttggtcgagcgcgggttcgccgcggtcgcgctgtcgggcgagcatagccagaac
gagcgcaaccaggcgctccaggcgctgcgcgatcgccgcgcgcgcgtctgcgtcgccacc
gacgtcgcctcgcgcgggatcgacttgcccagcctcagtctcgtcgtccatgtcgagctg
ccccgcgatgccgagacgctgcagcaccgttcgggccgaaccggccgcgcgggcaagaag
ggcaccgccgtcctgatcgtcccctatccgcgccgccgccgggtcgaggcgatgctgcgc
ggggcgcggatcaacgccgactggatcgacgcgccgaccgccgaccagattcgcgcgaac
gaccgcgagcgcctgctcgccgcgctgctggcgccgatcgaagtcgacgaagaggatgcc
gcgctggccgagcgcctgctcgccgaaaagacgccgcaggaaatcgccgccgcgctcgtc
cacgcccaccgcgccgcgatgccccagcccgaggaaatggccgagcagacccccgaggcg
cgccgcgccgcacaggccgagcggcaccgtccggggttcgaggatgtggtgtggttccgc
atggacattggtcgtcgccagaacgccgatccgcgctgggtcctcccgctgatctgccgt
cgcggggcgctaaccaagaacgatatcggtgcgatccgcatcggcccgaacgagacgatg
ttccaggtgccgcgcgcgatcgcgtccaaattcgccgccgcggtcgccaagactgcggaa
gcggacgaggatgtccggatcgaagcagcgcccgatggcccgccccagcatgacggcccg
cgcggccatgacggcccgcgcccgcagcgcaacggccccaaccgctccgggccgccgcgc
tccggccccggcggcccgccgcgtggccgccccggcgctgacggtcccggcggcggcggc
ggcgcgccctatcgctccaacgtcggcgccccgcacaaggctcgccccttccgcaagggg
ccgccgcgcgggtga
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