Sphingomonas hengshuiensis: TS85_15255
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Entry
TS85_15255 CDS
T03848
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TS85_15255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphi03021
]
TS85_15255
03400 DNA repair and recombination proteins [BR:
sphi03400
]
TS85_15255
Enzymes [BR:
sphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TS85_15255
Transcription machinery [BR:
sphi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TS85_15255
DNA repair and recombination proteins [BR:
sphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TS85_15255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
DUF211
RNA_pol_L_2
HHH_XRCC3_RpoA
IDH
Motif
Other DBs
NCBI-ProteinID:
AJP72846
UniProt:
A0A7U4J9Q8
LinkDB
All DBs
Position
complement(3438807..3439877)
Genome browser
AA seq
356 aa
AA seq
DB search
MSVNAKNWQELKKPNGLEKKPGGDPKRKSTFVAEPLERGFGLTLGNALRRVLLSSLQGAA
VTSIKIENVLHEFSSLAGVREDVTDIVLNVKQIAIRMQGEGPKRLQLSATGPTEVKAGDI
AVSGDIEVMNPELVLCHLDDGATLNMELTADTGKGYVPAASNRPADAPIGLIPVDALYSP
VRQVSYKVENTRVGQELDYDKLTLSLETDGTITPEDALAYAARILQDQLALFVHFDDSAM
TRAAPVGMAAPAAPSDGGAVGDTAQINRYLLKKVDELELSVRSANCLKNDNIIYIGDLVQ
KTEAEMLRTPNFGRKSLNEIKEVLSSMGLRLGMEIPGWPPENIEEMAKKLEQEIMG
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
gtgtccgtcaacgctaagaattggcaggaactcaagaagcccaacggcctcgagaagaag
cccggcggcgatcccaagcgcaagtcgaccttcgttgcagagccgctggagcgcggtttc
ggcctgacgctcggcaacgcgctgcgccgcgtgctgttgtcgtcgctccagggtgccgcc
gtgacctcgatcaagatcgagaatgtgctgcacgaattctcgtcgctcgccggcgtgcgc
gaggacgtgaccgatatcgtcctcaacgtgaagcagatcgcgatccgcatgcagggcgaa
ggcccgaagcggctccagctttcggcaaccggcccgacggaagtcaaggccggcgacatc
gccgtctcgggcgacatcgaagtgatgaaccccgaactggtcctctgccacctcgacgat
ggcgcgacgctcaacatggagctgaccgccgacaccggtaagggctatgtccccgccgcg
tcgaaccgtccggcggatgccccgatcggcctgatcccggtcgatgcgctgtacagcccg
gtccgccaggtgtcgtacaaggtcgagaatacccgcgtcggccaggaactggattacgac
aagctcacgctgagcctcgagaccgacggcacgatcacgcccgaggacgcgctcgcttat
gccgcgcgcatcctgcaggaccagctggccctgttcgtccacttcgacgacagcgcgatg
acccgtgcggctccggtcggcatggctgctccggcggctccgtcggacggcggcgccgtg
ggcgataccgcgcagatcaaccgttaccttctcaagaaggtcgacgagctggagctgtcg
gtgcgttcggccaattgcctcaagaacgacaacatcatctatatcggcgacctggtccag
aagaccgaagccgagatgctgcgcacgccgaacttcggccgcaagtcgctcaacgagatc
aaggaagtcctctcgtcgatgggtctgcgcctcggcatggaaatcccgggctggccgccc
gagaacatcgaagagatggcgaagaagctcgaacaggaaatcatgggctga
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