Sphingomonas hengshuiensis: TS85_20290
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Entry
TS85_20290 CDS
T03848
Name
(GenBank) DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03030
DNA replication
sphi03410
Base excision repair
sphi03420
Nucleotide excision repair
sphi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TS85_20290
03410 Base excision repair
TS85_20290
03420 Nucleotide excision repair
TS85_20290
03440 Homologous recombination
TS85_20290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphi03032
]
TS85_20290
03400 DNA repair and recombination proteins [BR:
sphi03400
]
TS85_20290
Enzymes [BR:
sphi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TS85_20290
DNA replication proteins [BR:
sphi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TS85_20290
DNA repair and recombination proteins [BR:
sphi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
TS85_20290
NER (nucleotide excision repair)
GGR (global genome repair) factors
TS85_20290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
HHH_5
DprA_N
IMS_HHH
HHH
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AJP73637
UniProt:
A0A7U4JB94
LinkDB
All DBs
Position
4444328..4447084
Genome browser
AA seq
918 aa
AA seq
DB search
MANHLYLVDGSGYIFRAYHRLPPLTNKHGEPVGAVYGYTTMLWKLADEVHKADGPTHMAV
ILDKSSQTFRNDLYDQYKANRPPPPEDLVPQFPMIRDATRAFSLPCIEEAGWEADDLIAS
YAKAALAQGWTVTIVSSDKDLMQLIEPGLDLYDTMNNRRLGAEAVIEKFGVEPKQLGEVL
ALMGDSVDNVPGVPGIGPKTAAKLIQEHGTVEAVLAAAPAMKPSKMRDNLIEHAEMARLS
RKLVELSCDVPLPDPLEDLALQGIPDAPLRAFLDHHGFKSLIARLSVVADAPVEVHEAPG
LEPDPPCDHDAYETVVTVEALDRWIADAMHQGWVAIDTETTGLDATRAGLVGISLALAPN
RACYIPLAHGGSDMFAEKPAQLDTALAIERLKPLLADPAVLKIGHNLKYDAIILARLGVT
IAPYDDTIVMSFDLDAGLHGHGMDELAATHLSHSCIAYKDVVGTGKKQFGFHEVDLKAAT
RYAAEDADVTLRLWKRFKPRLAYEGATRVYEMVDRPLVAVIADMEQAGVKVDAAVLARLS
DEFSKQMAVLEEEIHGIAGFKFTIGSPKQLGDVLFEQMGIKGGRKGKSGVYSTDVTELER
IAADKDSPGRVMAAKVLDWRQLSKLKSTYTDALQAQINPATGRVHTSYSLTGAQTGRLSS
TDPNLQNIPIRTEVGRQIRDAFVAEPGNVILAADYSQIELRLAAHIADVPALRDAFARGD
DIHSMTAMELFGEVNRDTRGRAKTINFAILYGISRWGLAGRLDVTPDEAQAMISRYFERF
PGINRYIADTLAEAKERGYTSTLFGRKTHFPRLKSPNVNERAGSERAAINAPIQGTSADI
IKRAMARMGPALAEAGLPNVRMLMQVHDELVFELPEGDVDAARPIIERVMATAAEPAIRL
SVPLGVEIGVGPSWGAAH
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcatctctatctggtcgacggctcgggctatattttccgtgcgtatcaccgc
ctcccgccgctcaccaacaagcatggcgagcccgtgggcgccgtctatggctataccacc
atgctgtggaagctggcggacgaggtgcacaaggcggatggcccgacgcatatggccgtc
atcctcgacaagtcgagccagaccttccgcaacgacctgtacgatcagtacaaggcgaat
cgcccacccccgcccgaggatctggtcccgcaattcccgatgatccgcgacgccacgcgc
gccttttcgctgccgtgcatcgaggaagcgggatgggaggccgacgatctgatcgccagc
tatgccaaggccgcgctggcgcagggctggacggtgacgatcgtcagttcggacaaggat
ctcatgcagctgatcgagccggggctcgacctgtacgacacgatgaacaaccggcggctg
ggcgccgaggcggtgatcgagaagttcggcgtcgagcccaagcagctcggcgaagtgctc
gcgctgatgggcgacagcgtcgacaatgtgccgggggtgcccgggatcgggccgaagacg
gcggcgaagctgatccaggagcacggcacggtcgaggcggtgcttgccgccgcgccggcg
atgaaaccgtcgaagatgcgcgacaacctcatcgagcatgccgagatggcgcggctatcg
cgcaaactggtcgaattgtcgtgcgacgtgccgctgcccgatccgctcgaggacctcgcg
ctccaggggattcccgatgcgccgctgcgcgcgttccttgaccatcacggcttcaagtcg
ctgatcgcgcggctgtccgtcgtcgccgatgcgccggtggaagtgcacgaggcgccgggg
ctggagcccgatccgccgtgcgaccatgacgcctatgaaaccgtcgtgaccgtggaggcg
ctcgaccgctggatcgccgatgccatgcaccagggatgggtggcgatcgataccgagacc
accgggctcgacgcgacgcgcgccgggctggtggggatcagcctggcgctggcgcccaac
cgcgcctgctatatcccgctggcgcatggcggcagcgacatgttcgcggagaagccggcc
cagctcgacaccgcgctggcgatcgagcggctcaagccgctgctcgccgacccggcggtg
ctcaagatcgggcataatctgaaatatgacgcgatcattttggcgcgtctcggcgtcacc
attgcgccctatgacgatacgatcgtgatgagcttcgacctcgacgcaggcttgcacggg
catggcatggacgagctggccgcaacgcacctctcgcatagctgcatcgcgtataaggac
gtggtgggcaccggcaagaagcagttcggcttccacgaagtcgatctgaaggcagcgacg
cgctatgccgccgaggatgccgatgtcacgctgcggctgtggaagcggttcaagccgcgg
ctcgcctatgagggcgcgacgcgggtgtacgagatggtcgatcgcccgctggtcgcggtg
atcgcggacatggagcaggcgggggtcaaggtcgacgccgcggtgctcgcgcggctttcg
gacgaattctcgaagcagatggcggtgctggaggaggaaatccacggcatcgccgggttc
aagttcacgatcggcagccccaagcaattgggcgacgtgctgttcgagcagatggggatc
aagggcgggcgcaagggcaagtcgggggtgtactccaccgacgtgaccgagctggagcgg
atcgccgccgacaaggattcgccgggccgggtgatggcggcgaaggtgctcgactggcgc
cagctgtcgaagctcaaatccacctataccgacgctttgcaggcacagatcaacccggcg
acggggcgcgtccataccagctatagcctgaccggcgcgcagaccgggcggctgtcgtcg
accgatccgaacctccagaacatcccgatccgcaccgaagtgggccgccagatccgcgac
gcctttgtcgcggagccgggcaatgtcatcctggcggcggattattcgcagatcgagctg
cggctggcggcgcatatcgccgatgtgcccgcgctgcgcgacgcctttgcgcgcggcgac
gacatccacagcatgaccgcgatggagctgttcggcgaagtgaaccgcgacacgcgcggg
cgggccaagacgatcaacttcgcgatcctgtacggcatttcgcgctgggggcttgccggg
cggctcgacgtgacgcccgacgaggcgcaggcgatgatcagccgctatttcgagcggttt
ccggggatcaaccgctatatcgccgacacgctggccgaggcgaaggagcgcggctacacc
agcaccttgttcgggcggaagacgcatttcccgcggctcaaatcgcccaatgtcaacgag
cgcgccggtagcgaacgcgccgcgatcaacgcgccgatccagggcaccagcgccgatatc
atcaagcgcgcgatggcacggatggggcctgcgctggccgaggctgggctgcccaatgtc
cgcatgctgatgcaggtgcatgacgaactcgtgttcgaactgcccgagggcgatgtggat
gcggcgcgcccgatcatcgagcgggtgatggcgaccgccgccgagcctgcgattcggctg
agcgtgccgttgggcgtggagatcggcgtgggtccgagctggggcgccgcgcattga
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