Sphingomonas hengshuiensis: TS85_22410
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Entry
TS85_22410 CDS
T03848
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphi
Sphingomonas hengshuiensis
Pathway
sphi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TS85_22410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphi03019
]
TS85_22410
Enzymes [BR:
sphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TS85_22410
Messenger RNA biogenesis [BR:
sphi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TS85_22410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Utp25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJP73967
UniProt:
A0A7U4JBW6
LinkDB
All DBs
Position
complement(4888195..4889691)
Genome browser
AA seq
498 aa
AA seq
DB search
MEFKQLGLSEIVLSALAAKGYTEATPIQAQSIPSLLEGRDLLGIAQTGTGKTAAFMLPSI
DRLIASGKRAQPRGCRMLVLAPTRELASQIAESARAYSKGTKLSVTTLFGGTSVHKNKTD
LARGVDIVVATPGRLVDLLDQHYAILLGIEILVLDEADQMMDLGFIHALKRIVRELPSKR
QTLFFSATMPKSIRELAGQFIKDPVEVKVTPVATTAERVDQYVTHIQQAEKQSLLTIQLR
DPAIDRALIFTRTKHGADRVVKLLAGSGVASNAIHGNKSQPQRERALAEFRSGKVKVLIA
TDIAARGIDVSGVSHVFNFELPNVPEQYVHRIGRTARAGAAGIAISYCADDERPYLRDIE
KLTRQKLTVQPLPENFLGESAKIKSSRAPMPVSRDEQNGRSGRAMQSQGRPGGGQRSAAP
RGGQGQGERREARPFNGERRDDARRPAPTGERSGEPRRDSAPRSDAPRGDAPRNYARPKS
KFTARPARPAGAGGSRPR
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggaattcaaacaactcggcctttccgagatcgtcctctctgcgctcgcggcaaagggc
tataccgaagccacgccgatccaggcccagtcgatcccgtcgctgctcgaagggcgcgac
ctgctcggcatcgcccagaccggcaccggcaagaccgcggcgttcatgctgccgtcgatc
gatcgcctgatcgcatcgggcaagcgcgcccagccgcgcggctgccgcatgctcgtcctc
gcgcccacccgcgaactggccagccagatcgccgaaagcgcgcgtgcctattcgaagggc
accaagctgtcggtcacgacgctgttcggcggcacctcggtccacaagaacaagaccgac
ctggcccgcggcgtcgacatcgtcgtcgcgacgccgggccgcctcgtcgacttgctcgac
cagcattacgcgatcctgctcggcatcgagatcctcgtgctcgacgaagccgaccagatg
atggacctcggcttcatccatgcgctgaagcgcatcgtccgcgagcttccgtcgaagcgc
cagacgctgttcttctcggcgacgatgccgaagtcgatccgcgaactggccggccagttc
atcaaggacccggtcgaagtgaaggtgacccccgtcgccaccactgccgagcgcgtcgac
caatatgtcacgcatatccagcaggccgagaagcagtcactgctgacgatccagctccgc
gaccccgcgatcgaccgtgcgctgatcttcacccgcaccaagcatggcgccgaccgcgtc
gtgaagctgctcgcgggcagcggcgttgcgtcgaacgcgatccatggcaacaagagccag
ccccagcgcgagcgcgcgctcgccgagttccgctcgggcaaggtcaaggtgctgatcgcg
accgatatcgccgcgcgcgggatcgacgtgtcgggggtcagccatgtgttcaatttcgag
ctgcccaatgtgcccgagcaatatgtccaccgcatcggccgcaccgcgcgcgccggcgct
gcgggcatcgcgatcagctattgcgccgatgacgagcgtccgtacctgcgcgacatcgag
aagctgactcgccagaagctgaccgtccagccgctgcccgagaatttcctcggcgaatcg
gccaagatcaagtcgagccgcgcgccgatgccggtcagccgcgatgagcagaatggccgc
agcggtcgtgcgatgcagagccagggccgtcccggcggcggccagcgcagcgccgcgccg
cgcggtggccagggtcagggcgagcgccgcgaggcacgcccgttcaacggcgagcgtcgc
gacgacgcccgccgcccggcacccaccggcgagcgcagcggcgaaccccgccgcgactcg
gctccgcgcagcgatgcaccgcgcggcgacgccccccgcaactatgcgcggcccaagagc
aagttcaccgcccgcccggcccgtcccgccggcgccggcggcagccgcccgcgctga
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