Tardibacter chloracetimidivorans: BSL82_00460
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Entry
BSL82_00460 CDS
T04967
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphj
Tardibacter chloracetimidivorans
Pathway
sphj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BSL82_00460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphj03019
]
BSL82_00460
Enzymes [BR:
sphj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BSL82_00460
Messenger RNA biogenesis [BR:
sphj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BSL82_00460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
AAA_30
AAA_19
AAA_22
P-loop_SecA
AroM
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
API60863
UniProt:
A0A1L3ZZ01
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All DBs
Position
complement(89041..90474)
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AA seq
477 aa
AA seq
DB search
MRAHARLKDCILKTFSELGLADPIAQALAAEGYETPTPIQAQAIPYVLQGKDLLGIAQTG
TGKTAAFALPILDRLAQNPVQRMRHSTRVLVLSPTRELASQIAESFRVYGRNLKMTVATV
FGGVPINRQRIMLQSGVDVLVATPGRLLDLIDQRILTLNHVEVLVLDEADQMLDLGFIHA
LRRIVPMLPKRRQTLFFSATMPKQIAELAARYLTDPVKVAVTPVATTAERIDQRVMFVDQ
REKQALLNITLADPAIQRVLVFTRTKHGADRVVKHLSAASIQSAAIHGNKSQPQREKALA
EFKSGRIKVLVATDIAARGIDIDAVSHVVNFELPNVPEQYVHRIGRTARAGAEGIALSFC
ADDERPYLRDIEKLTKVRLAQQPLPEGIRAALAAMPKLAPERRDDRPRGDRPHGDRGHRQ
GERRERHEPKPFGARPAGERGGHRGSNAGGGGGGNGGGGNRSRNGQRRTGGGQRVSA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgctcatgcacgtttgaaagactgtattttgaaaactttttccgaactcggcctt
gccgatccgattgcccaggcgctcgcggcggagggatatgaaacccccacccccattcag
gcccaggccattccctatgtgctgcagggcaaggatctgctcggcatcgcgcagaccggc
accggcaagaccgctgccttcgcgcttcccattctggaccggctggcgcaaaaccccgtc
cagcggatgcgccattccacccgcgtactggtgctgtcgcccacccgcgaactcgcaagc
cagattgccgaaagctttcgcgtttacggccgcaatctgaagatgaccgtcgcgacggtg
ttcggcggcgtgccgatcaaccgccagcggatcatgctccagtcgggcgtcgacgtgctt
gtcgcaacgcccggtcgcctgctcgatttgatcgaccagcgcatcctcaccctgaaccat
gtcgaggttctggtgctggacgaggccgaccagatgctggaccttggcttcatccacgca
ttgcgccgcattgtgccgatgctgccgaagcgtcgccagaccctgttcttttccgcaacc
atgccgaagcagatcgccgagcttgccgcgcgttacctgaccgatccggtgaaggttgcc
gtcacccccgtcgccaccacggctgagcggatcgaccagcgcgtcatgttcgtcgatcag
cgcgagaaacaggcgctgctcaacatcacgctcgccgatccggcgatccagcgcgtgctg
gtgttcacccgcacgaagcatggtgctgaccgcgtggtgaagcatctgagcgcggcgagc
attcagtccgcggccattcacggcaacaagagccagccgcaacgcgaaaaggcgctggcc
gagttcaagtcgggcaggatcaaggtgcttgtggccaccgacatcgcggcgcgcggcatc
gacatcgacgccgtaagccatgtcgtgaacttcgaactgccgaacgtgcccgagcaatat
gtccaccgcatcggccggaccgcgcgtgcgggagcggaagggatcgcgctcagcttctgc
gccgatgacgaacgcccctatctgcgcgacatcgaaaagctgacgaaggtcaggcttgcc
cagcaaccgctgccggaaggcatccgcgcggcccttgccgccatgccgaagcttgcgcct
gaacggcgcgacgaccggccgcgcggggaccgcccgcatggcgaccggggccatcgccaa
ggcgaacgccgcgaacgtcatgagccaaagcctttcggcgcgcgtcctgcgggcgagcgc
ggaggccatcgcggcagcaatgccggtggtggtggcggcggcaatggcggcgggggcaat
cgctcccgcaacggccagcgccgtactggcggcggccagcgcgtttcggcctga
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