Tardibacter chloracetimidivorans: BSL82_05985
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Entry
BSL82_05985 CDS
T04967
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
sphj
Tardibacter chloracetimidivorans
Brite
KEGG Orthology (KO) [BR:
sphj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphj03019
]
BSL82_05985
Enzymes [BR:
sphj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BSL82_05985
Messenger RNA biogenesis [BR:
sphj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BSL82_05985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_30
AAA_19
CON_HrpB
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
API58918
UniProt:
A0A1L3ZTG9
LinkDB
All DBs
Position
1154128..1156581
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AA seq
817 aa
AA seq
DB search
MTALPVEAALPDLIAALDAASNAVLIAPPGAGKTTAVAPALLGRPWRDGKIIVLAPRRLA
ARAAAERMAELAGEAVGRTIGYRTRLDSKTSAATRIEVVTEGIFANRIQADPELAGVSAV
LFDEAHERSLEGDTALALALDAQSALRPDLRLLVMSATLDGAAYARLMQDAPLIESEGRT
FPLEYRYLGRDAGERIEDAMARAIRQALRENEGDVLAFLPGVAEIERTAERVGDMPGIAL
HRLHGSLSPQEQRAAVRAGSTRKLVLATAIAETSLTIDGVRVVVDSGLARRPRYDRGSGL
TRLVTERVSRAAANQRAGRAGRQAPGIAYRLWDEQQTASLPPFDPPEILEADLSGLVLDL
ALWGVNDPASLRWLDPPPAAAVAEARDRLARLDALDADGRPTAHGREIARLPLPPRLGHM
LIAARDHDAVATAARVAVLLGERGLGGKHADLSTRLRRWAESRDPRAASAARLASRWQGL
VEPEGGSAPVEDDAGLCVALAFPDRVARRRGADGAEWLTVGGRGLKLDPADPLARHEWLA
VAEAQGSAASARILAAAPIDAALVERLFASRIVTERSARYDPATRAVTPERRRRLGAITL
SRGPDSSAEPAAVSAALEEAVREHGLHLLPWPEEARALQARVGFVRGHDSSLPDLSDEAL
GRSIAEWLPPLLQNIRRLDAISPERLNRVLQDMLGWEGGRALERMAPARLATPAGSNHEI
DYAADGGPTVHVRVQALFGLKAHPMVARGAVPLTLALTSPAGRPIQTTRDLPGFWAGSWQ
AVAKEMRGRYPKHPWPDDPAAAAATVRTKKADARRSS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgcgcttccggtcgaagccgcccttcccgatctgatcgcagcgcttgacgctgcg
tcgaacgccgtcctcatcgccccgccgggcgcgggcaagacgaccgcagtggcgccagcg
ctgctcggccgcccgtggcgcgacggcaagatcatcgtcctcgccccccgccgccttgca
gcgcgcgccgccgccgaacgcatggccgaacttgcgggcgaagccgtggggcgcaccatc
ggctatcgcacgcggctggacagcaagacctcggccgcgacgcggatagaagtggtcacc
gagggcatattcgcgaaccgcattcaggccgacccggagcttgccggcgtttccgccgtg
ctgttcgacgaagcgcacgaacgaagtctggagggcgacaccgcgcttgcgctggcgctc
gacgcccaaagcgcgctgcggccggacctgcggctgctcgtcatgtccgccacgctcgac
ggggccgcctatgcgcggctgatgcaggatgcgcccctcatcgagagcgaaggccgaacc
ttccctttggaatacaggtatctgggccgagatgcgggcgagcggatcgaggacgcgatg
gcgcgcgcgatccgtcaggcactgcgcgagaacgagggcgatgtgctggccttcctcccc
ggcgtcgccgagatcgaacgcacggccgaacgggtcggcgacatgcccggcattgccctt
caccggctgcacggctcgctttcgccgcaagagcagcgggccgccgtccgtgccggctcc
actcgcaagctggtgctcgccactgcgatcgcggagaccagcctcacgatcgacggtgtt
cgggtggtggtcgattcaggccttgcgcgccgcccgcgctatgaccgtggcagcggcctc
acgcgactggtgaccgagcgcgtcagccgggccgccgccaatcagcgggcgggacgcgcc
ggaaggcaagcgccgggcatcgcctatcgcctttgggacgagcagcagacggcaagcctt
ccgcccttcgatccgccggaaatccttgaggcggacctgagcgggctggtgctggacctt
gcgctctggggcgtgaacgatccggcgagcctgcgctggctcgatccgccgcccgccgcc
gccgtggccgaagcgcgggaccggctggcgcggctggacgcgcttgatgcggacggccgc
ccgacagcgcacggacgcgagatcgcgcgactgccgctgccgccgcgccttggccatatg
ctgatcgccgcccgcgaccatgatgcggtcgccaccgccgcccgcgtcgccgtgctgctc
ggtgagcgggggctgggcggcaagcatgccgatctttccacccgcctgcgccgctgggcg
gagtcgcgcgatccccgcgccgcatcggcggcaaggcttgcctcgcggtggcaaggtctg
gtggagcccgagggcgggagcgcgcccgtggaagacgacgccgggctgtgcgtggcgctt
gcctttccggaccgggtcgcccggcgtcggggggccgatggcgcggagtggctgacggtg
ggtggacgagggctgaagctggaccccgccgatccgctcgcccggcacgaatggcttgcc
gtggccgaggcgcagggcagcgccgcatccgcccgcatccttgccgcggcacccatcgac
gccgcgctggtggagcggcttttcgccagccggatcgtgaccgaacggagcgcccgatat
gatccggcgacacgcgcggtcacgcccgaacgccgccgcaggctgggcgcgatcacgctt
tcgcgcgggccggacagcagcgccgaacccgccgccgtcagcgccgcgctggaagaggcg
gtgcgcgaacatggcctccacctgctcccctggcccgaggaagcgcgcgcgcttcaggcc
cgcgtcggctttgtgcgggggcatgactccagcctccccgatctttcggacgaagcgctt
ggccggagcattgccgaatggctgccgccgctgcttcagaatatccggcggctggacgcc
atatcgcccgagcggctgaaccgcgtgcttcaggacatgcttggctgggagggcggccgc
gcgctggagcgcatggcccctgcccggctcgcgaccccggcgggatcgaaccacgagatc
gactatgcggcggacggcggcccaaccgttcatgtgcgcgtgcaggcgctgttcgggctg
aaggcgcaccccatggttgcgcgcggagcggtaccgctgacgctggcgctgacctctccc
gccgggcggccgatccagaccacgcgcgacctgcccggcttctgggcgggaagctggcag
gcggtggccaaggaaatgcgcggccgctatccaaagcatccctggccggacgaccccgcc
gccgctgccgccaccgtgcggacaaagaaggcggatgcgcgacgctcctcttga
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