Sphingopyxis fribergensis: SKP52_00245
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Entry
SKP52_00245 CDS
T03542
Name
(GenBank) HhH-GPD
KO
K03575
A/G-specific adenine glycosylase [EC:
3.2.2.31
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SKP52_00245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_00245
Enzymes [BR:
sphk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.31 adenine glycosylase
SKP52_00245
DNA repair and recombination proteins [BR:
sphk03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SKP52_00245
Prokaryotic type
SKP52_00245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
NUDIX_4
HHH
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
AJA07000
UniProt:
A0A0A7PAJ1
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All DBs
Position
47998..49035
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AA seq
345 aa
AA seq
DB search
MSVQTSDIVGDFAGRLLDWYDQSARVLPWRIAPNSGGDPDPYRVWLAEVMLQQTTVAAVA
GYFARFTERWPTVADLAAAGDADVMAAWAGLGYYARARNLLACARVVMRDHGGRFPDSEA
GLRALPGIGDYTAASVAAIAFGRAAVVIDANVERVIARHRLIETPLPMAKREIRAALALL
VPGDRPGDFAQALMDLGATVCTPRGPACAICPLMADCRARGRADIERLPVKPPKKAKPHR
HGLAHWIEQDGQLWLVRRPDKGMLGGMRALPGGEWGEVPSESGIVSVDHGFTHFDLTLTL
VRRAAPHEGPDAAAEGLWWPIADLDAAGLPTLYRKLTDKMLERDA
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgtccagacttccgacatcgttggcgacttcgcggggcggctgctcgactggtac
gaccagtcggcgcgggtgctgccgtggcggatcgcgccgaacagtggcggcgaccccgat
ccctatcgcgtctggctggccgaggtcatgttgcagcagacgaccgtcgctgcggtcgcg
ggctatttcgcgcgctttaccgagcgttggccgacggttgccgatctggcggcggcgggc
gatgccgatgtcatggcggcgtgggcggggcttggctattatgcccgcgcgcgcaatctg
ctcgcctgcgcgcgcgtggttatgcgcgaccatggtgggcgctttcccgatagcgaagcg
gggctgcgcgcgctgcccgggatcggcgattataccgcggcgtcggtcgcggcgattgcc
tttggccgcgcggcggtggtcattgacgcgaatgtcgagcgcgtgatcgcgcgccaccgg
ctgatcgagacaccgctgccgatggcgaagcgcgagattcgtgccgctttggcgctgctg
gtgccgggcgatcgaccgggcgatttcgctcaggcgctgatggaccttggtgcgacggtc
tgcacgccgcgtggaccggcgtgcgcaatctgtccgttgatggcggactgccgcgcgcgc
ggccgggcggatatcgagcgcttgccggtcaagccgccgaagaaggcgaagccgcatcgc
cacgggcttgcgcactggatcgagcaggacgggcagctgtggctcgtccgtcgccccgac
aagggcatgctcggcgggatgcgtgcgctgcccggcggcgaatggggcgaggtgccatcc
gagtcgggaattgtcagcgtcgatcatggttttacccatttcgacctgacgctgaccttg
gttcggcgcgcggctccccacgaaggccccgatgccgcagcggaaggcctatggtggccg
atcgcagaccttgacgcggcggggctgccgacgctctatcgcaaactgaccgacaagatg
ctggagagagacgcatga
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