Sphingopyxis fribergensis: SKP52_04780
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Entry
SKP52_04780 CDS
T03542
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03030
DNA replication
sphk03410
Base excision repair
sphk03420
Nucleotide excision repair
sphk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SKP52_04780 (polA)
03410 Base excision repair
SKP52_04780 (polA)
03420 Nucleotide excision repair
SKP52_04780 (polA)
03440 Homologous recombination
SKP52_04780 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sphk03032
]
SKP52_04780 (polA)
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_04780 (polA)
Enzymes [BR:
sphk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SKP52_04780 (polA)
DNA replication proteins [BR:
sphk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SKP52_04780 (polA)
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
SKP52_04780 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SKP52_04780 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
HAMP_N3
Ribosomal_L20
HHH_2
DprA_N
NYN_YacP
Motif
Other DBs
NCBI-ProteinID:
AJA07883
UniProt:
A0A0A7PF69
LinkDB
All DBs
Position
complement(1001106..1003916)
Genome browser
AA seq
936 aa
AA seq
DB search
MSEKNHLYLVDGSSYIFRAYHRLPPLTNPKGVPVGAVYGYTTMLWKLAKDLHDADGPTHL
AVILDHSSQSFRNEIYDQYKANRPEPPEDLRPQFPLIRDATRAFSLPCIEMEGLEADDLI
ASYAEAAVREGWDVTIVSSDKDLMQLIREPSEGPHVDMLDTMKNVRLGLEAVNEKFGVTP
DLVGDVLALMGDSVDNVPGVRGVGPKTATKLIQEYGNLTAALDGAEGMKASKLRDNLIEH
RGMAELSRILVDLKRDCPLPDALDDLKLGAIPPLPLKTFLDEHGFRSLSAKLDLGATPGG
PPTFPRANASLTAASAGPATPTLPAMPPIDRAAYECVTTVEALDRWIAEARAAHVVGIDT
ETASLDSVTGRLVGVSMATAPGRACYIPLGHGGTDMFAEKPEQIAMDVAIGRLHALLADD
AVLKVGHNLKYDIGVLAQHGVTVAPYDDTLVMSFALDAGKHQHGLDELAKLHLDHICLTF
KEMCGTGKSQISFAEVQLDRATEYAAEDADVALRLWKLLKLRLPIEGGTRIYEMVDRPLA
SIVEGMERAGIMVDREYLAKLSGEFATEMLRIEGEIHGLAGQPFAIGSPKQLGEILFDKL
GLKGGRKGKSGDWSTDLSELERLERDGVPIARKILEWRQLAKLKSTYTDALQQQINATTG
RVHTSYSLVGAQTGRLSSTDPNLQNIPIRTETGRQIRDAFIAAPGHVLIAADYSQIELRL
AAHMADVPELKQAFAKGEDIHAATAIELFGEVNRDTRGKAKTVNFSILYGISRWGLAGRL
EVTPDEAQALISRYFERFPGISDYITDTLESVRAKGYTETLFGRKTWFPRIKAANQNERA
GSERAAINAPIQGTSADLIKRAMARMPKALADAGLSDVRMLLQVHDELVFEAPEDKAEAA
GAVIRAVMSGAAEPALTLSVPLEVEVGIGKSWGEAH
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgtccgagaagaatcatctctatctggtcgatggctccagttacatcttccgcgcctat
caccgcctgccgccgctgacgaacccgaagggggtgcccgtcggcgcggtctatggctac
acgacgatgctgtggaagctcgccaaggatttgcacgacgccgacgggccgacgcatctt
gcggtgatcctcgatcattcaagccagtcgtttcgcaacgagatttacgatcaatataag
gcgaaccggcccgaaccgcccgaagaccttcgcccgcaatttccgctgatccgcgacgcg
acgcgcgccttttcgctgccctgcatcgagatggaaggcttggaggccgacgacctgatc
gcctcctatgccgaggccgcggtgcgcgagggctgggacgttacgatcgtgtcgagcgac
aaggatctgatgcagctgatacgcgagcccagcgaaggtccgcatgtcgacatgctcgac
acgatgaaaaatgtgcggctcgggctggaagccgtgaacgagaaattcggcgtgacgccc
gatctggtcggcgacgtgctcgcgctgatgggcgacagcgtcgataatgtgccgggcgtg
cgcggcgtcgggccgaagaccgcgaccaagctgatccaggaatatggcaatctgaccgcc
gcgctcgacggcgccgagggcatgaaggcgtcgaagctgcgcgacaatctgatcgagcat
cgcggcatggccgaactgtcgcgcatcctcgtcgacctgaaacgcgactgccccctcccc
gacgcgctcgacgacctgaagctcggcgcaatcccgccgcttccgctcaagaccttcctc
gacgaacatggcttccgttcgctctcggccaagctcgacctcggcgcgacgccgggcggc
ccgccgacctttccgcgcgcgaacgcctcgctaacggccgcgtccgcggggccggcgact
ccgacgctgcccgcgatgccgcccatcgaccgggcggcctatgaatgcgtcaccacggtc
gaggcgctcgaccgctggatcgccgaagcgcgcgccgcgcatgtcgtcgggatcgacacc
gaaaccgcgagcctcgacagcgtcaccggccgcctggtcggggtgagcatggcgaccgca
ccgggccgcgcctgctatatcccgctcggccacggcggcaccgacatgttcgccgaaaag
cccgaacagatcgcgatggacgtcgcgatcgggcgcctgcacgcattgctcgccgacgat
gcggtgctgaaggtcgggcataatctcaaatatgacatcggcgtgctcgcgcagcatggc
gttaccgtcgcgccctatgacgatacgctggtgatgagcttcgcgctcgacgcgggcaag
catcagcacgggctcgacgagctggcgaagctccacctcgatcacatctgcctgaccttc
aaggaaatgtgcgggacgggcaaatcgcagatcagctttgccgaagtgcagctcgaccgt
gcgaccgaatatgccgccgaggacgccgacgtcgcgctgcgcctgtggaaactcctcaag
ctccgtctgccgatcgagggcgggacgcgcatctatgaaatggtcgaccgcccgctcgcc
tcgatcgtcgagggtatggagcgcgccggcatcatggtcgaccgcgaatatctggcgaag
ctgtcgggcgagttcgcgaccgagatgctgcgtatcgaaggcgaaatccacggtctcgcc
ggccagcccttcgcgatcggcagcccgaagcagcttggtgaaatcctgtttgacaagctg
ggcctgaaaggcgggcgcaagggcaagtcgggcgactggtcgaccgacctcagcgaactc
gaacgcctcgaacgcgacggcgtgccaattgcgcgcaagatactggaatggcgccagctc
gcgaagctgaagtcgacctataccgacgcgctgcagcaacagatcaacgcgacgaccggg
cgtgtgcacaccagctacagcctcgtcggcgcgcagaccgggcgcctgtcgtcgaccgat
ccgaaccttcagaacatcccgattcggaccgagaccgggcgccagatccgcgacgccttc
atcgccgcgccgggccatgtgctgatcgccgccgattatagccagatcgagcttcggctc
gcagcgcatatggctgacgtgcccgaactcaaacaggccttcgctaagggcgaggacatt
cacgccgcgaccgcgatcgaattgttcggcgaggtcaaccgcgacacgcgcggcaaggcc
aagacggtcaatttctcgatcctctatggcatttcgcgatggggcctcgcgggccggctc
gaagtcacgcccgacgaggcgcaggcgctgatctcccgctatttcgaacgctttcccggc
atttcggactatatcaccgacacgctcgaaagcgtgcgtgccaagggctatacggagacc
ttattcggccggaaaacctggttcccgcgcatcaaggcggcgaaccagaatgaacgcgcg
ggcagcgagcgcgccgcgatcaacgccccgatccagggcaccagcgccgacctgatcaaa
cgcgcgatggcgcgcatgccgaaagccctcgccgacgcgggcctctccgacgtccgcatg
ctgctccaggtccacgacgaactggtgttcgaggcgcccgaggacaaggccgaagccgcg
ggcgcggtaatccgcgcggtgatgtcgggcgccgccgaacccgcactcacgctgtcggtc
ccgctcgaggtcgaggtcggcatcggcaagagctggggcgaagcgcattga
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