Sphingopyxis fribergensis: SKP52_05090
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Entry
SKP52_05090 CDS
T03542
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk00061
Fatty acid biosynthesis
sphk00071
Fatty acid degradation
sphk01100
Metabolic pathways
sphk01212
Fatty acid metabolism
sphk02024
Quorum sensing
sphk04146
Peroxisome
Module
sphk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SKP52_05090
00071 Fatty acid degradation
SKP52_05090
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SKP52_05090
09145 Cellular community - prokaryotes
02024 Quorum sensing
SKP52_05090
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sphk01004
]
SKP52_05090
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sphk04147
]
SKP52_05090
Enzymes [BR:
sphk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SKP52_05090
Lipid biosynthesis proteins [BR:
sphk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SKP52_05090
Exosome [BR:
sphk04147
]
Exosomal proteins
Exosomal proteins of breast milk
SKP52_05090
Exosomal proteins of breast cancer cells
SKP52_05090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Cap17-like_N
Motif
Other DBs
NCBI-ProteinID:
AJA07945
UniProt:
A0A0A7PD52
LinkDB
All DBs
Position
1073360..1075189
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AA seq
609 aa
AA seq
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MKLENPHLDHFPSLVAMFFDRAGRGGEDPFLWRKADRVWQPLSWRQVANQVAALAHNLRE
LGLKDGDRVVLVSENRPEWCIADLGIMAAGCITVPTYTTNTERDHQHILDNSGAKAVIVS
TAKLARTLMPAVMRSESHIVISMESLRVGQQGEVTVHDWAPLVADGEAYLDETRARAAAM
TRDDTACLIYTSGTGGAPRGVIQHHGAILHNAAGAAEVLVNDFGIGDEEVFLSFLPLSHA
YEHSGGQFLPIMVGAQIYYSEGLEKLVSNIEETRPTIMVVVPRLFEVIRARMIKSVEKQG
KLANWMLNQALRVGEKDYERRMGVLDRPVDLILDKLFRPKIQKRFGGRMKALVSGGAPLN
PEIGVFFHSIGLTLLQGYGQTEAGPVISCNRPSAGIKMDTVGPPLMNTEVKIADDGEILV
RGELVMKGYWRNKAETERVLVPSPAEPEKGAWLHTGDIGHIDGQGRIVITDRKKDLIVND
KGDNVSPQRVEGMLTLQPEILQAMVYGDKRPHLVGILVPDPEWMAEWAEAEGLPKDLCRL
REHEKFRAAIRAAVDRVNGQLSVIEKVRKFDFADEAFTIENEQMTPSMKIRRHILKQVYE
DKIAALYKA
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgaaaacccccatctcgaccattttccgagtttggtcgcgatgttcttcgac
cgtgcggggcgcggcggcgaagatcccttcctgtggcgcaaggctgatcgcgtctggcag
ccgctgagttggcggcaggtggcgaaccaggtggcggcgctcgcgcacaatctgcgcgaa
ctgggcctgaaggacggcgatcgcgtcgtgctggtcagcgagaaccgccccgaatggtgc
atcgccgaccttggcatcatggccgcgggctgcatcaccgtgccgacctacaccacgaac
accgaacgcgaccatcaacatatcctcgacaacagcggcgcgaaggcggtgatcgtttcg
accgcgaagctcgcgcgcacgctgatgcccgcggtgatgcgttcagaatcgcatatcgtg
atcagcatggagagcctccgcgttggccagcagggcgaggtcacggttcacgactgggcg
ccgctcgtcgccgacggcgaggcctatctcgacgaaaccagagcgcgcgccgcggcgatg
acgcgcgacgacaccgcgtgcctaatctacaccagtggtaccggcggcgcgccgcgtggg
gtaatacagcaccatggggcgatcctgcacaacgcggcgggcgccgcggaggtgctcgtc
aatgatttcggcatcggcgacgaggaagtgtttctgtcgttcctgccactcagccacgcc
tatgaacattcgggcggccagttcctgccaatcatggtcggcgcgcaaatctattacagc
gaggggctcgaaaagctcgtctcgaacatcgaggagacgcgcccgacgatcatggtcgtc
gtcccgcgcctgttcgaggtgatccgcgcgcggatgatcaagtcggtcgagaagcagggc
aagctcgccaactggatgctgaaccaggcgctgcgcgtcggcgaaaaggattatgagcgc
cgcatgggcgtgctcgaccgcccggtcgacctgatcctcgacaaattgttccggcccaag
atccagaaacgcttcggcggccggatgaaggcgctggtgtcgggcggcgcgccgctcaac
ccggaaatcggcgttttcttccactcgatcgggctgaccctgctgcaaggctatggccag
accgaggcgggcccggtgatcagttgcaaccgcccgagcgcggggatcaagatggacacc
gtcggcccgccgctgatgaataccgaagtgaagattgccgacgacggcgagatattggtg
cgcggcgaactcgtgatgaagggctattggcgcaacaaggccgaaaccgagcgcgtgctc
gtcccaagcccggcggagccggaaaagggcgcctggctccacacgggcgacatcggccat
atcgacgggcaaggccgtatcgtcatcaccgaccgcaagaaggatttgatcgtcaacgac
aagggcgacaatgtctcgccgcagcgcgtcgagggcatgctgacgctccagcccgaaatc
ctgcaggcgatggtctatggcgacaagcgcccgcacctcgttggcatcctcgtccccgac
cccgaatggatggccgaatgggccgaggccgaagggctgccgaaagacctatgccggctc
cgcgaacatgaaaaattccgcgccgcgattcgcgccgcggtcgaccgcgtcaacggccaa
ctctcggtgatcgaaaaggtccgcaaattcgacttcgccgatgaagccttcacgatcgag
aatgagcagatgacgccgtcgatgaagatccggcgccacatcctgaaacaggtctatgag
gacaagatcgcggccttgtataaagcatag
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