Sphingopyxis fribergensis: SKP52_05285
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Entry
SKP52_05285 CDS
T03542
Symbol
rimO
Name
(GenBank) Ribosomal protein S12 methylthiotransferase RimO
KO
K14441
ribosomal protein S12 methylthiotransferase [EC:
2.8.4.4
]
Organism
sphk
Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sphk03009
]
SKP52_05285 (rimO)
Enzymes [BR:
sphk01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.4 [ribosomal protein uS12] (aspartate89-C3)-methylthiotransferase
SKP52_05285 (rimO)
Ribosome biogenesis [BR:
sphk03009
]
Prokaryotic type
ribosomal protein modification factors
SKP52_05285 (rimO)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
UPF0004
TRAM_2
TRAM
YqeY
Motif
Other DBs
NCBI-ProteinID:
AJA07984
UniProt:
A0A0A7PDD9
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All DBs
Position
complement(1108318..1109688)
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AA seq
456 aa
AA seq
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MTVKTLPTQPKVGMVSLGCPKALVDSERILTKLRADGYGLSPDYAGADVVLVNTCGFLDS
AKEESLEAIGEAMAENGRVIVTGCMGNEADVIRARFPNVLAVTGAHQYEQVVDAVHDAAP
PTQGPFVDLVPEGGLKLTPRHYSYLKISEGCNHSCSFCIIPDLRGKLVSRRIDAVLREAE
KLVAAGTKELLVISQDTSAYGVDIRHDPRRWHGREVRAHMTDLARELGQLKTSEGRAPWV
RLHYVYPYPHVDAVIPLMAEGLLTPYLDIPFQHASPSVLKRMKRPANEAKVLERLKNWRA
IAPDIAIRSSFVVGFPGETEADFQYLLDWLDEAQLDRVGAFRFEPVAGAQANALADHVPE
ELKEERYQRIMEKTAAISAAKLEAKIGRTMPVIIDEVGEADEDGSIGATGRSQADAPEID
GHVYLRDVAATLKSGDIVDVEIEDADEHDLFGVVAG
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgacagtcaaaaccctccccacccagccgaaggtcggcatggtttcgctcggctgcccc
aaggcattggtcgatagcgaacggattctcaccaagctgcgcgccgacggctatggcctg
tcgcccgattatgcgggcgccgacgtcgtgctcgtcaacacctgcggcttcctcgactcg
gcgaaggaagagagcctcgaggcgatcggcgaagcgatggccgagaatggccgcgtcatc
gtcaccggctgcatgggcaacgaggccgacgtcatccgcgcgcgcttcccgaacgtgctc
gcggtcaccggcgcgcaccagtatgagcaggtcgtcgacgccgtccacgacgccgcgccg
cccacccaaggcccgttcgtcgacctcgttcccgaaggcgggctgaaactgacgccgcgc
cactacagctacctcaagatttccgaaggctgcaaccacagctgctccttctgcatcatt
ccggacctccgcggcaagctggtcagccgccgcatcgacgcggtgctgcgcgaggccgaa
aagctcgtcgccgcgggcactaaggaactgctggtgatcagccaggacacctcggcttac
ggcgtcgatatccgccacgacccgcgtcggtggcacggccgcgaagtgcgcgcgcacatg
accgacctcgcgcgcgaactcggccagttaaagacgagcgaaggccgcgccccatgggtg
cgcctccactatgtctatccctatccgcacgtcgacgcggtcatcccgctgatggccgag
gggctgctgacgccctatctggacatccccttccagcatgcgagcccgagcgtcctcaag
cgcatgaagcgccccgcgaacgaggcgaaggtgctcgaacgcctcaaaaactggcgcgcg
atcgcccccgacatcgcgatccgctcgagcttcgtcgtcggcttccccggcgagaccgag
gccgacttccaatatctcctcgactggctcgacgaagcgcagctcgaccgcgtcggcgcc
ttccgcttcgaacccgtcgcgggggcgcaggccaacgcactcgccgatcatgtccccgag
gaactcaaggaagagcgctaccagcgcatcatggaaaagaccgccgcgatcagcgcggcg
aagctcgaagccaagatcggtcgcaccatgccggtgatcatcgacgaagtcggcgaagcg
gatgaagacggcagcatcggcgccactggccgatcacaggcggatgcgcccgagattgac
ggccacgtctatctgcgcgacgtcgcggcgacgctgaagtccggcgatatcgtcgatgtc
gagatcgaagatgccgacgagcatgatctgttcggggtggtcgctggctaa
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