Sphingopyxis fribergensis: SKP52_10490
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Entry
SKP52_10490 CDS
T03542
Symbol
capD
Name
(GenBank) polysaccharide biosynthesis protein
KO
K24300
UDP-N-acetylglucosamine 4,6-dehydratase [EC:
4.2.1.135
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk00541
Biosynthesis of various nucleotide sugars
sphk00552
Teichoic acid biosynthesis
sphk01100
Metabolic pathways
sphk01250
Biosynthesis of nucleotide sugars
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
SKP52_10490 (capD)
00552 Teichoic acid biosynthesis
SKP52_10490 (capD)
Enzymes [BR:
sphk01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.135 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining)
SKP52_10490 (capD)
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GFIT
Motif
Pfam:
Polysacc_synt_2
Epimerase
RmlD_sub_bind
GDP_Man_Dehyd
3Beta_HSD
adh_short
PglD_N
CoA_binding_3
KR
Motif
Other DBs
NCBI-ProteinID:
AJA09003
UniProt:
A0A0A7PID0
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All DBs
Position
complement(2218784..2220718)
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AA seq
644 aa
AA seq
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MVAIFSEKVLGLSRPIKRAIALAADALLCIISVHVAYYLRTNEWADLQGPMLYPAITAIF
LALPIFAISGLYRAIFRYSGGAALLTIVKAVAIYAIPFAIVYTFIGIPPVPRTIGLIQPI
LLVLFVVGSRGIVSGWLGGIYLNAVAAADKPQTIIYGAGASGRQLASALQVSGQVRVVGF
LDDDPTLWKATINGLNVHSPDKLAALTARHRITDVLLAINQATRAQRASIISRLKGSGLH
IRTMPGVDQLARGIVSFGDLRDLDIEDLLGRAPIPPDVELLHKNVTGKVVMVTGAGGSIG
SEICRQIARLAPDILLLVDASEYNLYAMHQELVREMESGLVNARSVVPLLANVRDRSRLD
EIIGTWRPHTIYHAAAYKHVPLVEHNLLEGVTNNVFGTLNCALAAREHGVSAFVLISTDK
AVRPTNVMGATKRLAEIILQALNADGLPTKFSMVRFGNVLGSSGSVVPLFRNQIAAGGPI
TITDREITRYFMTIPEAAQLVIQAGAMANGGDVFVLDMGEPVKIVDLARAMIELSGLSVR
DESNGDGDIAIEYVGLRPGEKLYEELLIGNDPMPSAHPRILRANEPFIAWAELRVALEHL
NAMIGERKSLAARELLRKLVVEFEQNGDLVDFVALRRDEGVVSG
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
gtggtagctatattttctgaaaaagttctcgggctgtcgcgccccatcaagcgggcgatc
gcgctcgccgccgacgcgctgctttgcattatcagcgttcatgtcgcctactatcttcgc
acaaacgagtgggccgaccttcagggcccgatgctgtatccggccatcaccgccatattt
ctggcgcttccgatctttgcgatttccggtctttatagggccattttccgttacagcggc
ggcgcggcgctgctcacgatcgtcaaggctgtggcgatttatgccattcccttcgcgatc
gtctacaccttcattggcatcccgccggtaccgcggacgatcggtctgatccagccaatt
ttgctggtgctttttgtcgtcgggtcgcgcgggatcgtcagcggctggctcggcgggatc
tacctcaacgcggtcgccgctgccgacaagccgcagaccatcatttatggcgcgggtgca
tcagggcgccagttggcgtcggcgctgcaagtcagcggacaggtgcgcgtggtcggtttc
ctcgatgatgatccgactttgtggaaagcgacgatcaacggtctgaacgtccattcgccc
gacaagctggcggctcttacggcgcggcatcggattaccgacgtgctgctcgcgatcaat
caagccacccgcgcgcagcgagcgtcgatcatttcccggctgaaaggatcggggctgcac
atccgtacaatgcccggagtcgaccagcttgcgcgcgggatcgtatcctttggcgacctt
cgcgatctcgacatcgaggatttgctcgggcgcgctccgattccgcccgacgttgagctg
ttacacaagaatgtcaccggcaaggtcgtgatggtgaccggcgcaggcgggtcgatcggc
agcgagatttgccggcagatcgctcggctggcgcccgatatcctgctcctcgtcgatgcg
agcgaatataatctctatgcgatgcaccaggaactcgtgcgcgagatggaaagcggcctc
gttaacgcgcgatcggtcgtgcccctgcttgccaacgtacgcgaccgaagccggctcgac
gagatcatcggtacgtggcgcccgcataccatctatcacgccgccgcgtacaaacatgtg
ccgctggtcgagcataatttgctcgaaggcgtgacgaacaatgtgttcgggacgctaaac
tgcgcccttgccgcgcgcgagcatggcgtgtccgccttcgtgctgatcagcaccgacaag
gcggtgcgcccgacgaacgtcatgggtgcaacaaagcgacttgcggaaatcattctgcaa
gcgctgaatgccgacggtctgccgacgaaattctcgatggtccgtttcggcaatgtgctg
ggatcgagtggttcggtggtgccgctgtttcgcaatcagattgcggcgggcggcccgatc
acgattaccgatcgcgagatcacccgctatttcatgaccattcccgaagccgcgcaattg
gtcatccaggccggcgcgatggcgaatggcggcgacgtgttcgtgttggatatgggcgag
cctgtaaagatcgtcgatcttgcgcgcgcgatgatcgaactgtcgggtctcagcgtccgc
gacgaaagcaatggcgacggcgacatcgcgatcgaatatgttggcttgcggccgggcgaa
aagctctacgaagagcttctgatcggcaatgatccgatgccgtcggctcatccccgtatc
ctgcgcgccaacgagcccttcatcgcatgggcggaacttcgcgttgcattggaacatctc
aacgcgatgatcggcgagcgcaaatcgctggccgcacgcgagcttttgcgaaagcttgtc
gtggaatttgagcagaatggcgatctggtcgatttcgtcgcgctccgccgggacgaaggg
gtggttagcggctag
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