Sphingopyxis fribergensis: SKP52_12590
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Entry
SKP52_12590 CDS
T03542
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphk
Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphk03016
]
SKP52_12590 (rnd)
Enzymes [BR:
sphk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SKP52_12590 (rnd)
Transfer RNA biogenesis [BR:
sphk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SKP52_12590 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
AJA09409
UniProt:
A0A0A7PHF5
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Position
2680235..2681422
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AA seq
395 aa
AA seq
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MQVHPLIETNAALVEFCALIRGSDFIAVDTEFMRENTFWPELCLIQVADRDHAAAIDPMA
PGIDLKPLLDLLVDNEDMLKVFHAGGQDVEIIFNLTGKTPHPIFDTQIGQMALGQAEQVG
YSNLVEAWIGLQLDKGARFTDWSRRPLDKRQIDYAVGDVTHLAKIFPMMLDKLIKTGRGH
WLDEEMEKLADPANYSVDPENAWQRIKIPTRKLDVLGRLQSLAAWREREARTKNLPRGRI
VKDETLADLAAHPPKDQDGLGRVRGLSATWRTNDIGGRLMDAIANAKPMSKDDMPERAPR
GPGLGKEGTLVADLLKLLLKIRARELNVAARLIARSDDLEALAAGAREGIQMMQGWRYDV
FGHAALDLVEGRMGFAVVNGKLVMSEIDPNAAIEI
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtccatccgttgatcgaaaccaacgccgcgctcgtcgaattctgcgccctcatt
cggggcagcgatttcatcgcggtcgataccgaattcatgcgtgaaaacactttctggcca
gagctttgcctgatccaggtggccgaccgcgaccatgccgcggcgatcgacccgatggcg
ccaggaattgacttgaagcccctgctcgacctgctcgtcgataatgaagacatgctgaag
gtcttccatgcgggcggacaggatgtcgaaatcatcttcaacctgaccggcaagacgccg
catccgatcttcgacacgcagatcggccagatggcgctcggtcaggccgaacaggtcggc
tattcgaacctcgtcgaggcatggatcgggctgcaactcgacaagggcgcgcgcttcacc
gactggagccgccgcccgctcgacaagcgtcagatcgactacgccgtcggcgacgtgacg
cacctggcgaagattttcccgatgatgctcgacaagctaatcaagaccggccgcggtcat
tggctcgacgaggaaatggaaaagctcgccgaccccgccaattacagcgtcgatcccgaa
aatgcgtggcagcggatcaaaatcccgacgcgcaaactcgacgtgctcggccggttgcag
tcgctcgccgcatggcgcgagcgcgaggcacgcacgaagaacctgccgcgcggccggatc
gtcaaggacgaaacgctcgccgacctcgccgcgcatccgccgaaggatcaagacgggctg
gggcgcgttcgcggcctgtcggcgacatggcggaccaacgatatcggcggccggttgatg
gacgcgatcgccaatgccaagccgatgtcgaaggacgacatgcccgagcgcgcaccgcgc
ggtccggggctcggcaaggaaggcacgttggttgccgaccttctgaaattactgctcaaa
attcgcgcacgcgaattgaatgtcgcggcgcggctgatcgcgcgcagcgacgatctcgaa
gcgctcgccgcgggtgcgcgcgagggtatccagatgatgcagggttggcgctacgacgtg
tttggccacgccgcgctcgacctcgtcgagggccggatgggctttgccgtcgtcaacggc
aagctggtgatgagcgaaatcgaccccaacgccgcgatagaaatctaa
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