Sphingopyxis fribergensis: SKP52_15280
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Entry
SKP52_15280 CDS
T03542
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SKP52_15280 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphk03019
]
SKP52_15280 (rhlE)
Enzymes [BR:
sphk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SKP52_15280 (rhlE)
Messenger RNA biogenesis [BR:
sphk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SKP52_15280 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
MerR-DNA-bind
ERCC3_RAD25_C
CMS1
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AJA09935
UniProt:
A0A0A7PIV6
LinkDB
All DBs
Position
complement(3263619..3265004)
Genome browser
AA seq
461 aa
AA seq
DB search
MTTFNDFGLHADINRALAAKDYTVPTPIQVQAIPPLMKGRDLCGIAQTGTGKTAGFSLPS
IHHLLTYPHRPTPRGCRMLVLAPTRELAAQIAQSCRDYGRFTKLSVTTVFGGVPINKQIR
DLSGGVDILVATPGRLLDLIDQRALRLDDVEIFVLDEADQMMDMGFIHSLRRIAKLLPSR
RQNLFFSATMPKEIAHLAEQFLEDPVTVSVTPAATTVEKISQYATFVEQKEKQALLHAIV
ASEDIDRALIFTRTKHGADRVVRHLAGAGIKAMAIHGNKSQSQRTHALQAFRSGDIKLLV
ATDIAARGIDVSGVSHVINFEIPNVPEQYVHRIGRTARAGAEGKAISFIAPDERPYMRDI
ERVTRSKSEPMPLPENFNELVRNLPKPVAPPRDTGSQGRDPNRQRQDAHRHRGGGNGKPQ
GERGPRREGTAGEGAEGQRKRRFRPRNKSVGAHKGAVKRVG
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgacgacttttaacgactttggcctgcacgccgacatcaatcgcgcgcttgccgccaag
gattataccgtcccgaccccgatccaggtccaggcgatcccgccgctgatgaagggccgc
gacctgtgcggtatcgcgcagaccggcaccggcaagaccgccggcttctcgctgccgtcg
atccatcaccttttgacctatccgcaccgcccgaccccgcgcggctgccgaatgctcgtc
ctcgcgccgacccgcgagcttgccgcgcagatcgcgcaaagctgccgcgactacggccgc
tttaccaagctcagcgtcacgaccgtctttggcggcgtgccgatcaacaagcagatccgc
gacctgtcgggcggcgtcgatatccttgtcgccacgccgggccgtctgctcgacctgatc
gaccagcgcgcgctgcgcctcgacgatgtcgaaatcttcgtcctcgacgaagccgaccag
atgatggacatgggcttcatccattcgctccgccgcatcgccaagctgctgccgtcgcgt
cgccagaacctattcttctcggcgacgatgccgaaggaaatcgcgcacctcgccgaacag
ttcctcgaggatccggtcaccgtgtcggtgaccccggcggcgaccacggttgaaaagatc
agccagtatgcgaccttcgtcgaacagaaggaaaagcaggcgctgctccacgcgatcgtc
gccagcgaggatatcgatcgcgcgctgatcttcacccgcaccaagcatggcgccgaccgc
gtcgtgcgtcacctcgcgggcgcgggcatcaaggcgatggcgatccatggcaacaaaagc
cagtcgcagcgcacccacgcgctgcaggccttccgctcgggcgacatcaagctgctcgtc
gcgaccgacattgccgcgcgcggcatcgacgtgtcgggcgtcagccatgtgatcaacttc
gagatcccgaacgtccccgaacaatatgtccaccgcatcggccgcaccgcgcgcgccggg
gccgagggcaaggcgatcagcttcatcgcccccgacgagcggccgtacatgcgcgacatc
gagcgcgtgacgcggagcaagtccgagccgatgccgctgcccgagaatttcaacgagttg
gtgcgcaacctgcccaagcccgtggcgccgccgcgcgacaccggcagccagggccgcgac
cccaatcgccagcgtcaggacgcgcatcgccaccgtggcggcggtaacggcaagccgcaa
ggcgagcgtggcccccgccgtgaggggacggcaggcgaaggcgccgagggccagcgcaag
cgccgtttccgcccgcgcaacaaaagcgtcggcgcgcacaagggcgcggtgaagcgcgtc
ggttga
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