Sphingopyxis fribergensis: SKP52_15460
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Entry
SKP52_15460 CDS
T03542
Name
(GenBank) ECF subfamily RNA polymerase sigma-24 factor
KO
K24073
RNA polymerase sigma factor CnrH
Organism
sphk
Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphk03021
]
SKP52_15460
Transcription machinery [BR:
sphk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SKP52_15460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_Tnp_ISL3
PhyR_sigma-like
GerE
HTH_30
Motif
Other DBs
NCBI-ProteinID:
AJA09971
UniProt:
A0A0A7PIL6
LinkDB
All DBs
Position
complement(3304701..3305267)
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AA seq
188 aa
AA seq
DB search
MSLDLSQCSDRELAALARTGREDVYRELLARYKAPVFRLIRHHVGHAEEAMDLSQESFVA
AFAAIERYDGDRPFRIWISRIALNKCRDWARRRAVRSFFTRALPLENAHDVAIEAPAPDV
EAGDRAELARVRKAMAGLPHNLREVLVLRGVEDLSQSATAQLLKVSEKTVETRLYRARLK
LRMLLDEN
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
gtgagcctcgacctatcgcaatgtagcgaccgcgaactcgccgcgctcgcccgcaccgga
cgggaggatgtctatcgcgaactgctggcgcgatacaaggcgccggtctttcgcctgatc
cgacatcatgtcggccacgccgaggaagcgatggacctgtcgcaggaaagctttgtcgcc
gccttcgccgcgatcgaacgctatgatggcgaccggccgttccggatatggatttcgcgt
atcgcgctcaacaaatgccgcgactgggcgcgccggcgcgccgtgcggtcctttttcact
cgcgcgctgccgctcgaaaatgcgcatgacgtggcaatcgaggcgccagcgcccgacgtc
gaagccggcgaccgcgcggaactggcgcgggtacggaaggcgatggccggattaccgcat
aatttgcgcgaggtgctggtgcttcgcggcgtcgaagacctcagccagtcggcaacggcg
caattgctcaaggtcagcgaaaagaccgtggaaacgcgcctttatcgcgcgcgcttgaaa
ctgcggatgctgctcgacgaaaattga
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