Sphingopyxis fribergensis: SKP52_15545
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Entry
SKP52_15545 CDS
T03542
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SKP52_15545 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphk03021
]
SKP52_15545 (rpoD)
Transcription machinery [BR:
sphk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SKP52_15545 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF6565
Motif
Other DBs
NCBI-ProteinID:
AJA09988
UniProt:
A0A0A7PL55
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All DBs
Position
3320172..3322196
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AA seq
674 aa
AA seq
DB search
MATKNTAETDTDTDGPLIDLNEADVKKLIARGKKRGYLTYDELNAALPQDEMSSEQIEDI
MSAISDMGINIVESDEDVQEEADQEPDDEVDVSAGTGSVSNPAIEKKKETVDRTDDPVRM
YLREMGAVELLSREGEIAIAKRIEAGRDTMILGLCESPLTFNAIIDWSNALNNGEMQLRE
IVDLEAMLSKDPVPENLEEEGAEDNGEISEKTAGVSFKDEDEVEEEPAADSDDEDGEGSS
GKRETFEEDEEDNTLSLAAMEELLKPDALEKFANITKSFKAFSKLQEARLESLSGGEEFP
SASEKKYHKLREELTAQVESVQFHNTKIEYLVDQLYSYNRRLTALGGQMLRLAERHKVPR
KSFLDNYVGRELEENWIDGVSSIDKKWAAFAENEAGAVDRIRIEISEIAQAAGMSLTEFR
RVVNMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRCSRQFLHESGREPT
PEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAVIPVDAAVQSN
LKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLK
HPSRSRKMRSFLDQ
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaagaacaccgccgaaaccgataccgacaccgacggcccgctgatcgacctc
aatgaggccgacgtcaaaaagctgatcgcgcgcggcaagaagcgcggttacctgacctat
gacgagctgaatgcggcgctgccgcaggacgagatgtcgtccgagcagatcgaggatatc
atgtcggcgatctccgacatgggcatcaacatcgtcgaaagcgacgaagatgtgcaggaa
gaggccgaccaggagcccgacgacgaagtcgatgtcagcgccggcaccggttcggtttcg
aaccccgcaatcgaaaagaagaaggaaacggtcgatcgcaccgacgatcccgttcgcatg
tacctgcgcgaaatgggcgcggtcgagctgctcagccgcgagggcgaaatcgcgatcgcg
aaacgcatcgaggcgggccgcgacacgatgatcctcgggctttgcgaaagcccgctgacc
ttcaacgcgatcatcgactggtcgaacgcgctgaacaatggcgagatgcagctgcgcgag
atcgtcgacttggaagcgatgctctcgaaagacccggttcccgagaatctcgaggaagag
ggcgccgaagacaacggcgaaatcagcgaaaagaccgccggcgtgtcgttcaaggacgag
gatgaggtcgaggaagagcccgccgccgattcggatgacgaggacggcgaaggctcgtcg
ggcaaacgcgaaacctttgaggaggatgaggaagacaacaccctcagcctcgcggcgatg
gaagagctgctgaagcccgacgcgctcgaaaaattcgcgaacatcaccaagagcttcaaa
gccttttcgaagctgcaggaagcgcgcctcgaatcgctttcgggcggcgaggaattcccg
tcggcgtcggagaagaagtaccacaagctgcgcgaggagctcaccgcgcaggtcgagagc
gtgcagttccacaacaccaagatcgaatatctcgtcgaccagctctacagctataaccgg
cgcctgaccgcgctcggcggtcagatgctgcgccttgccgaacgccacaaagtgccgcgc
aagtcgttcctcgacaattatgtcgggcgcgagctcgaagagaattggatcgatggtgtt
tcgtcgatcgacaagaaatgggccgccttcgccgagaacgaggccggcgccgtcgaccgc
atccgcatcgagatttccgaaatcgcgcaagccgcgggcatgagcctgaccgaattccgc
cgcgtcgtaaacatggtccagaagggcgagcgcgaggcgcgtatcgccaagaaggaaatg
gtcgaggcgaacctgcgcctcgtgatctcgatcgccaagaaatacacgaaccgcggcctg
cagttcctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtcgacaagttc
gagtatcgccgcggctacaagttcagcacctatgcgacctggtggatccgccaggcgatc
acccgctcgatcgccgaccaggcacgcacgatccgcatcccggtccatatgatcgagacg
atcaacaagctggttcgttgcagccgccagttcctccacgaaagtggccgcgagccgacc
cccgaggaaatggccgagcgtctgtcgatgccgctcgaaaaggtccgcaaggtgatgaag
atcgccaaggagccgatcagcctcgaaacgccgatcggcgacgaagaagacagccacctc
ggcgatttcatcgaggacaagaatgccgtcatcccggtcgacgccgcggtgcagtcgaac
ctcaaggaaacggttacgcgagttttggcgtcgcttacgccgcgtgaagagcgtgttctc
cgcatgcgcttcggcatcggcatgaacaccgaccatacccttgaagaggtcggccagcag
ttcagcgtgacgcgcgaacgtatccgccagatcgaggcgaaggcgctccgcaagctgaag
cacccgtcgcggtcgcgcaagatgcggtcgttcctcgaccagtaa
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