Sphingopyxis fribergensis: SKP52_16445
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Entry
SKP52_16445 CDS
T03542
Name
(GenBank) uracil DNA glycosylase
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SKP52_16445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_16445
Enzymes [BR:
sphk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
SKP52_16445
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SKP52_16445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
AJA10163
UniProt:
A0A0A7PLT5
LinkDB
All DBs
Position
complement(3500654..3502069)
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AA seq
471 aa
AA seq
DB search
MLAHPGDFAEWRSAARGLLAGGVAPEDVSWRGSEQGASLFGDETVAAPAAAVSLPRELLE
IAERVICHRDAEVPARLYRIVWRAARDRQLLARTTDADVDWLRKADKAIRRDVHKMHAFV
RFRRLGEEAGRESFAAWFEPTHRILRLTAPFFQRRFYGMDWAIVTPDARAIWQNETLSYG
AGGTKDEVPDSDIVEDQWRTYYGAIFNPARVKVDAMRAEMPKKYWKNLPEAQDIAPLLAG
AEARVERMREAAVSLANPLTDKWRTRVPDELLLDDDVRTLEELARAVDRCTRCPLYCNAT
QAVAGEGPEQARIMVVGEQPGDQEDLQGRPFVGPAGQVLNEALEEAGLDRTRLFLTNAVK
HFKFEPRGKRRLHQNPTTGEIDMCRWWLDKERAFVQPDLIVTLGGSALRGVTGKSASIKS
MRGTVHELEGGTKLIATIHPSFLLRLPDRTRAAEERKAFVADLIRARKLAA
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
gtgctggcccatcccggcgatttcgccgagtggcggagcgcggcgcggggcttgctcgcg
ggcggggtggcgcccgaggatgtgagctggcgggggagcgagcagggcgcgtcgctgttc
ggcgacgagacggtggcggcgcctgcggccgccgtgtcgctgccgcgcgaattgctcgaa
atcgccgagcgggtgatctgccaccgcgacgccgaagttccggcgcggctctaccgcatc
gtctggcgcgcggcgcgcgaccggcagttgctcgcgcggacgaccgatgccgatgtcgac
tggctccgcaaggccgacaaggcgatccgccgcgatgtgcacaagatgcacgcttttgtg
cgctttcggcggctcggtgaagaggcggggcgcgagagtttcgccgcgtggttcgagccg
acgcatcgcatcctgcggctcaccgcacccttctttcagcgccgcttctacggcatggac
tgggcgatcgtgacccccgacgcgcgggcgatctggcagaacgaaacgctgagctacggc
gccggggggacgaaggacgaggtgcccgacagcgacatcgtcgaagatcaatggcgcacc
tattatggcgccatcttcaatcccgcgcgggtcaaggtcgacgcgatgcgcgccgagatg
cccaagaaatattggaagaacctgcccgaggcgcaggatatcgcgccgctgcttgcgggc
gccgaagcgcgggtggaacgcatgcgcgaagcggccgtttccttggcgaaccctttgacc
gacaaatggcggacgcgcgtgcccgacgaattgcttctcgatgacgatgtgaggacgctg
gaggagctggcgcgcgcggtcgatcgctgcacgcgttgtccactctattgcaatgcgacg
caggcggtggctggcgaggggccggaacaggcgcgcatcatggtcgtcggcgagcagccg
ggcgatcaggaagatttgcaggggcgcccgttcgtggggccggcgggacaggtgctgaac
gaggcgctggaggaagcggggctcgaccggacgcggcttttcctcaccaacgcggtcaag
catttcaaattcgagccgcgcggcaaaaggcggctgcaccagaatccgacgacgggcgag
atcgatatgtgccgctggtggctcgacaaggagcgcgcgtttgttcagcccgacctgatc
gtgacgctgggcgggagcgccttgcgcggggtcacgggcaagagcgccagcattaagtcg
atgcgcggtacggtgcacgaactggaaggggggacgaagctgatcgcgacgatccacccg
tccttcctgctgcgcctgcccgatcggacacgcgccgccgaggagcgcaaggcgttcgtc
gccgacctgatccgcgcgcggaaactcgccgcctga
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