Sphingopyxis fribergensis: SKP52_17135
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Entry
SKP52_17135 CDS
T03542
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SKP52_17135 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphk03021
]
SKP52_17135 (rpoA)
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_17135 (rpoA)
Enzymes [BR:
sphk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SKP52_17135 (rpoA)
Transcription machinery [BR:
sphk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SKP52_17135 (rpoA)
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SKP52_17135 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
DUF211
IDH
Motif
Other DBs
NCBI-ProteinID:
AJA10298
UniProt:
A0A0A7PM59
LinkDB
All DBs
Position
3639385..3640443
Genome browser
AA seq
352 aa
AA seq
DB search
MTVNIRNWQELKKPSNLEIKAGSDGKRKATFVAEPLERGFGLTLGNALRRVLLSSLQGAA
ITSIKIENVLHEFSSLAGVREDVTDIVLNVKQIALKMEGEGPKRLQLSATGPATVKAGDI
MVSGDIKVMNPNHVICHLDDGATLNMELVADTGKGYVPATANRPIDAPIGLIPVDSLYSP
VRQVAYKVDNARIGQELDYDKLNLTVETDGTITPEDAVAYAARILQDQLQVFVHFEEAMN
DSGMIGMAASPTTADESDVNQLNRFLLKKVDELELSVRSANCLKNDNIIYIGDLVQKTEA
EMLRTPNFGRKSLNEIKEVLSSMGLRLGMDIPGWPPENIEEMAKKLEQELLG
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgactgtcaatatccggaactggcaggaattgaagaagcccagcaacctggaaatcaag
gctggcagcgacggcaagcgcaaggcgaccttcgtcgccgaaccgctcgagcgcggcttc
ggcctgacgctcggcaacgcgctgcgccgcgtgttgctctcgtcgctccagggtgcggct
atcacgtcgatcaagatcgagaatgttctccacgaattctcgagcctggccggcgtgcgc
gaagatgtcaccgacatcgtcctcaacgtgaagcagatcgcgctcaaaatggaaggcgaa
ggcccgaagcggctccagctttcggcgaccggtcccgcgaccgtcaaggccggcgacatc
atggtgtcgggcgacatcaaggtgatgaacccgaaccatgtcatctgtcacctggatgac
ggtgcgacgctgaacatggaacttgttgccgacaccggcaagggttatgtccccgcgacc
gccaaccgtccgatcgacgcgccgatcggcctgatcccggtcgactcgctctactcgccc
gtgcgccaggtcgcttacaaggtcgacaatgcccgcatcggtcaggaactggactatgac
aagctgaacctgaccgtcgaaaccgacggcacgatcaccccggaagacgccgtcgcttac
gccgcgcgcatcctccaggatcagctccaggtcttcgtccacttcgaagaagcgatgaac
gacagcggcatgatcggcatggcggcttcgccgaccaccgccgacgaaagcgacgtcaac
cagctcaaccgcttccttctcaagaaggtcgacgagctcgaattgtcggtccgctcggcg
aactgcctcaagaacgacaatatcatctatatcggtgatctcgttcagaagaccgaagcc
gaaatgctccgcaccccgaacttcggccgcaaatccttgaacgaaatcaaggaagtgctg
tcgtcgatgggcctgcgcctcggcatggacatccccggctggccgccggagaatatcgaa
gaaatggccaagaagctcgaacaagagctgctgggttaa
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