Sphingopyxis fribergensis: SKP52_17545
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Entry
SKP52_17545 CDS
T03542
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SKP52_17545 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphk03019
]
SKP52_17545 (pnp)
03016 Transfer RNA biogenesis [BR:
sphk03016
]
SKP52_17545 (pnp)
Enzymes [BR:
sphk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SKP52_17545 (pnp)
Messenger RNA biogenesis [BR:
sphk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SKP52_17545 (pnp)
Transfer RNA biogenesis [BR:
sphk03016
]
Prokaryotic type
tRNA degradation factors
SKP52_17545 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
KH_PNO1_2nd
BioW
DUF3016
Motif
Other DBs
NCBI-ProteinID:
AJA10380
UniProt:
A0A0A7PK48
LinkDB
All DBs
Position
complement(3714287..3716605)
Genome browser
AA seq
772 aa
AA seq
DB search
MFDVKKVSIEWGGETLTLETGKVARQADGAVVATLGETMVLAAVTAAKTVKEGQDFFPLT
VHYQEKYSGAGRIPGGFFKRERGATEKETLVSRLTDRPIRPLFPEGFYNEINVIAQVLSY
DGHNEPDILAMVAASAALTISGVPFMGPIGAARVGYVDGEYILNPTDAQVAEGDLDLVVA
ATYDAVMMVESEANELSEEIMLGAVLFAHDACKDVVKAIVKLAEQAAKDPWDMAEQADLT
AAKDKLKKLIGKDIAAAYKLTDKSARSNALNEARAKAKEAFSDAAPQDQMAAGKLMKKLE
AEIVRGAILKDGKRIDGRTTTQIRPILAETHFLPRAHGSALFTRGETQTIATCTLGTKDS
EQMIDGLNGLSYSNFMLHYNFPPYSVGEVGRFGAPSRRDIGHGKLAWRALHAVLPTKDEF
PYTIRITSDITESNGSSSMASVCGGSLAMMDAGVPLKRPVSGIAMGLILEGKDFAILSDI
LGDEDHLGDMDFKVAGTSEGITTMQMDIKIAGITREIFEAALNQAKEGRAHILGEMAKAL
GEARTELSAHAPRIETMQIDKAKIRDIIGTGGKVIREIVATTGAKVDIDDEGLIKISSSD
PEQIEAARKWISGIVEEAEVGKIYDGKVVNLVDFGAFVNFMGGKDGLVHVSEIANERVEK
VADVLSEGQEVKVKVLEIDPRGKVRLSMRVVNQETGEELEDTRPPREPREPRGDRGPRRD
GGDRGDRGPRGGGGGRDRGPRRDGGGGGDRGPRRERSEGPEDQGHVPDFLKD
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacgtgaaaaaagtatcgatcgagtggggcggtgaaacgctgaccctcgaaacg
ggcaaggttgcccgtcaggccgacggcgcggttgtcgcgacgctcggcgaaacgatggtc
ctggccgcggtcaccgccgccaagacggtcaaggaagggcaggatttcttcccgctcacc
gtccactatcaggaaaaatattcgggcgcaggccgcatccccggcggcttcttcaagcgc
gagcgcggcgcgaccgaaaaggaaactttggtttcgcgtttgaccgatcgtccgatccgt
ccgctgttccccgaaggtttctataacgaaatcaacgtcattgcccaggttctgagctat
gacggccacaacgagcccgacatcctcgcgatggtcgctgcgtcggccgcgctcaccatc
tcgggcgtgcccttcatgggtccgatcggcgctgcgcgcgtcggttatgtcgatggcgaa
tatatcctgaacccgaccgacgcgcaggttgccgaaggcgacctcgacctcgtcgtcgcc
gcgacctacgacgcggtgatgatggtcgaatccgaagccaatgagctgtcggaagagatc
atgctcggcgccgtcctgttcgcgcacgatgcgtgcaaggacgtcgtcaaggcgatcgtc
aagctggccgagcaggctgccaaggatccctgggacatggccgaacaggccgacctgacc
gccgccaaggacaagctgaagaagctgatcggcaaggacatcgccgccgcgtacaagctg
accgacaaatcggcccgctcgaacgcgctgaacgaagcccgcgccaaggccaaggaagct
ttctctgacgccgcgccgcaggaccagatggccgccggcaagctgatgaagaagctcgaa
gccgaaatcgtgcgcggcgccatcctcaaggacggcaagcgcatcgacggccgcacgacg
acgcagattcgtcccatccttgccgaaacgcacttcctgccccgcgcgcatggctcggcg
ctgttcacgcgcggcgagacgcagacgatcgcgacctgtacccttggcaccaaggacagc
gagcagatgatcgacggcctcaacggcctcagctactcgaacttcatgctgcactataac
ttcccgccctattcggtcggcgaagtcggtcgtttcggggcgcccagccgccgcgacatc
ggccacggcaagttggcatggcgtgcgctgcacgcggtgctgccgacgaaggacgagttc
ccctacacgatccgcatcaccagcgacatcaccgagtcgaacggctcgtcgtcgatggcg
tcggtttgcggcggttcgctcgcgatgatggacgccggcgttccgctgaagcgtccggtt
tcgggcatcgcgatggggctgatcctcgaaggcaaggatttcgcgatcctgtcggacatc
cttggtgacgaagatcacctcggcgacatggacttcaaggtggcgggcacgtccgaaggc
atcaccacgatgcagatggacatcaagatcgcgggcatcacgcgcgagatcttcgaagcc
gctttgaatcaggccaaggaaggccgcgcgcacatcctcggcgaaatggcgaaggcgctg
ggcgaagcccgcaccgagctgtcggcgcacgcaccgcgtatcgagacgatgcagatcgac
aaggcgaagatccgcgacatcatcggcaccggcggcaaggtgatccgcgagatcgtcgcg
acgaccggcgccaaggtcgacatcgacgacgaaggcctgatcaagatctcgtcgagcgat
cccgagcagatcgaagccgcgcgcaagtggatttcgggcatcgtcgaggaagccgaagtc
ggcaaaatctatgacggcaaggtcgtcaacctcgtcgatttcggtgcgttcgtgaatttc
atgggcggcaaggacggtctcgtccacgtcagcgaaatcgcgaacgagcgcgtcgagaag
gtcgccgacgtcctgagcgaaggccaggaagtcaaggtcaaggtcctcgagatcgatccg
cgcggcaaggttcgcctgtcgatgcgcgtcgtcaatcaggaaaccggcgaagagctggaa
gacacgcgcccgccgcgtgaaccccgcgaaccgcgcggcgatcgtggtccgcgccgtgat
ggcggcgaccgcggtgaccgcggcccgcgtggcggcggtggcggtcgtgaccgcggcccg
cgtcgtgacggcggcggcggtggcgatcgtggcccgcgccgcgaacgcagcgaaggtccg
gaagaccagggccatgtgcccgacttcctgaaggactaa
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