Sphingopyxis fribergensis: SKP52_17555
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Entry
SKP52_17555 CDS
T03542
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
sphk
Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphk03016
]
SKP52_17555
Enzymes [BR:
sphk01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
SKP52_17555
Transfer RNA biogenesis [BR:
sphk03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
SKP52_17555
Prokaryotic type
SKP52_17555
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
AJA10382
UniProt:
A0A0A7PQZ0
LinkDB
All DBs
Position
complement(3717093..3718046)
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AA seq
317 aa
AA seq
DB search
MNGWIILDKPLGLGSTQAVGAVKRVCREAGLGKVKVGHGGTLDPLATGVLPIALGEATKL
CGRMLDASKIYDFTIRFGTQTDGLDAEGEVVATSDMRPTLAEVEAVLPRFTGPIEQVPPA
FSAIKIDGQRAYDRARKGEAVEMKARAVTVYSLRHAGLDPASTAAPEEWTPDQVRGDEGG
EGLQEITLTAHVSKGTYIRSLARDIAHAVGTVGHVTMLRRTKAGPFDLSQAISLDKLNAF
GQGAAQSEFILPLEAGLVDIPALNLSPEAAGAIRQGRVWTGVATVDGLYWGRDSEMRPVA
LIEVLAGTLKVVRGFNL
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atgaacggctggatcatcctcgacaaacccctggggctcggctcgacgcaagcggttggc
gcggtcaaacgcgtgtgccgcgaggcggggctgggcaaggtcaaggtcggccatggcggg
acgctcgatccgctggcgaccggggtgctgccgatcgcactcggcgaggcgaccaagctc
tgcggccggatgctcgatgcgagcaagatttacgactttacgatcaggttcggaacccaa
accgacgggctcgatgccgagggcgaagtggtcgcgacgagcgacatgcgtccgacactt
gccgaggtcgaggcggtgctgccgcgcttcaccggcccgatcgaacaggtgccgccggct
ttttcggcgatcaagatcgacggccagcgcgcctatgatcgcgcgcgcaagggcgaggcg
gtcgagatgaaggcgcgggctgtaacagtctattcccttcgtcatgccggacttgatccg
gcatccactgcggcgccggaagaatggaccccggatcaagtccggggtgacgaaggaggg
gaggggcttcaggaaatcaccctcaccgcccacgtctccaaaggcacctatatccgcagc
cttgcgcgcgacatcgcgcatgccgtcggcaccgtcggccacgtcacgatgctccgccgc
accaaggccggaccgttcgacctgtcacaggcgatttcgctggacaaattgaacgcattc
ggccaaggcgccgcccaatcagaattcattctgccgctcgaggcagggctggtcgacatc
ccggctctgaacctttccccggaagcggcaggggcgatccgtcagggtcgcgtctggacc
ggggtagctacggttgacgggctctattggggaagggacagcgaaatgcgtcccgtcgcc
ctgatcgaggttttggcgggaacgctgaaggtcgtccggggcttcaatctgtaa
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