Sphingopyxis fribergensis: SKP52_17780
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Entry
SKP52_17780 CDS
T03542
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk00061
Fatty acid biosynthesis
sphk00071
Fatty acid degradation
sphk01100
Metabolic pathways
sphk01212
Fatty acid metabolism
sphk02024
Quorum sensing
sphk04146
Peroxisome
Module
sphk_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
SKP52_17780
00071 Fatty acid degradation
SKP52_17780
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
SKP52_17780
09145 Cellular community - prokaryotes
02024 Quorum sensing
SKP52_17780
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
sphk01004
]
SKP52_17780
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sphk04147
]
SKP52_17780
Enzymes [BR:
sphk01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
SKP52_17780
Lipid biosynthesis proteins [BR:
sphk01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
SKP52_17780
Exosome [BR:
sphk04147
]
Exosomal proteins
Exosomal proteins of breast milk
SKP52_17780
Exosomal proteins of breast cancer cells
SKP52_17780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
FG-GAP_3
Motif
Other DBs
NCBI-ProteinID:
AJA10426
UniProt:
A0A0A7PJY1
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All DBs
Position
3764336..3766015
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AA seq
559 aa
AA seq
DB search
MDSRFSWSTDYRHPTKWDQEFAPLSLPDMLAASVARRGDAPMLDFLGRQFSYAEVARGAA
RVARGLQQRGIGKGSRVGLFLPNVPHYVAAYYGALAAGATVVNFSPLYTVAELEAQVEDS
GTDTLFTISAAALLPTALQVLDGSSLKQLVVGSVAGGLPAAKSMLYRLFKRSEVAALPTD
PRIIRFSTLIDNDGKPDPVAIDAEQDIALIQYTGGTTGTPKGAKLTHQNLTANARQVNAI
DPDHDAADRILGVLPFFHVFANTCVLNRTILNGGTITMLPRFDAKQALEAITRTKTTALP
GVPTMYQALLDHPDLAKTDFSSLRICISGGAPMPGELREKFVAATGASLVEGYGLTESSG
VVATNPYEGPVKPGTIGQPIPATHIRLLDKEDASKDAPDGEPGELAVKGPQVMQGYWNRP
DADKDSFTDDGWLRTGDVAVVEAGGYIRIVDRLKDMIAVGGFKVYPSVIEAHLYEHPAVK
EAIVLGVPDAYRGEAPKAFVTLEDGFNVSGEALAAWLNPQLGKHERVNAVEVRLNLPKTM
IGKLDRKALRAEEKTSAKA
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atggacagccgcttttcctggtcgaccgattatcgccaccccacgaaatgggaccaggaa
tttgcgccgctgtcgctgcccgacatgctcgccgccagcgtggcgcggcgcggcgatgcg
ccgatgctcgatttcctcggccgccagttcagctatgccgaggtcgcgcgcggcgccgcg
cgcgtcgcgcgcgggctgcaacaacgcggcatcggcaagggtagccgcgtcggcctcttc
cttcccaacgtccctcattatgtcgcggcctattatggtgcgctcgcggctggggcgacg
gtggtcaacttttctccgctctacaccgtcgccgaactggaagcgcaggtcgaggattcg
ggcaccgacacgctgttcacgatcagtgccgcagcgctgctgccgaccgcactccaggtg
ctcgacggatcgagcctgaagcagctcgtcgtcgggtcggtcgcgggcggactgcctgcg
gcgaaatccatgctttaccgcctgttcaagcgcagcgaggtcgcggcgctgcccaccgac
ccgcgcatcatccgcttttccaccctcatcgacaatgacggcaagcccgatccggtcgcg
atcgacgccgaacaggacatcgcgctgatccagtacaccggcggcaccaccggcacgccg
aagggcgcgaagctgacgcaccagaacctgaccgccaatgcgcgacaggtgaatgcgatc
gaccccgatcatgacgccgccgaccgcatcctcggcgtacttcctttcttccacgtcttt
gccaacacctgcgtgctcaaccgcaccatcctcaacggcggtacgatcacgatgctgccg
cgtttcgacgcgaagcaggcgctcgaggcgatcacgcggacgaagaccaccgcgctgccc
ggcgtgccgacgatgtatcaggcgttgctcgatcatcccgacctcgcaaagaccgacttc
tcttcgctgcgtatctgcatctcgggcggcgcgccgatgcccggcgagctgcgtgagaag
ttcgtcgcagcgacaggcgcgtcgctcgtcgaaggctatggcctgaccgaaagttcgggc
gtcgtcgcgaccaacccctatgaaggcccggtcaagccgggcacgatcggccagccgatc
ccggcaacgcatatccgcctgctcgacaaggaggacgcttcaaaggacgctcccgacggc
gagcccggcgagctcgcggtcaaggggccgcaggtcatgcagggctattggaaccggccc
gatgccgacaaggacagcttcaccgacgacggctggctgcgcaccggcgacgtcgcggtg
gtcgaggcgggcggctatatccgcatcgtcgaccggctgaaggacatgatcgcggttggc
gggttcaaggtctatccgagcgtgatcgaagcgcatctctatgaacatccggcggtcaag
gaggcaatcgttctgggcgttcccgacgcctatcgcggcgaagcgcccaaggcgttcgtt
acgctcgaggatggcttcaacgtcagcggcgaggcgctcgccgcgtggctcaaccctcag
cttggcaagcatgaacgcgtgaacgcggtcgaggtgcgactgaacctgcccaagacgatg
atcggcaagctcgatcgcaaggcgttgcgtgcagaagagaaaacgagcgccaaagcctaa
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