Sphingopyxis fribergensis: SKP52_17940
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Entry
SKP52_17940 CDS
T03542
Name
(GenBank) UvrD/REP helicase
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
sphk
Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphk03400
]
SKP52_17940
Enzymes [BR:
sphk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SKP52_17940
DNA repair and recombination proteins [BR:
sphk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
SKP52_17940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
DUF2800
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AJA10458
UniProt:
A0A0A7PMJ3
LinkDB
All DBs
Position
complement(3797275..3800760)
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AA seq
1161 aa
AA seq
DB search
MTRLHDLDPGQQAAAEPGDHVWLGASAGTGKTQVLSARVLRLMLAGVAPDAILCITFTKA
GAAEMAHRIHERLALWVRMDDGDLRLDLRALGADWQQPGILDRARSLFATVIDSAPGAIR
VQTIHSFCQTLLASFPLEAKIMPGFRALEEGEAADLQRQVMGKLLSELGIEGDAMRRHAA
MLSRRMGQDAAMTFLVRCAHAFAAPFQTRILPPRGHDLRAALGLPDGDAEAWLVTRLGAG
AIADADISAIATVGRTWGSATGVARAGTMAAWLAADPAARATMLGDVLGAIVKKDGDIAA
HYLTPGKQMGDCLGSAECVAAAIGELMATMRAMQVADDLAAAWDLGSRFAEAYALAKREG
GLADFDDLIAIAGSLLRLGQFGEWVRFKLDQRTDHILVDEAQDTNTRQWAIVAALAEEFF
AGTGAKDERIRTMFTVGDRKQAIFGFQGTEPAAFEAARIRFGEWAEGGGQPFAQVDLVTN
YRSSPAVLDVVDEWVGSGGAELMGLASDEPPHLPFRSEHPGRVELWQPLPVGKALAAEAG
DEEAGDEDASEGGDPLAPASDPASLRLSRAIADEVRDWIEHGKDGRSVAPGDILILVRRR
RDLAARIVARLQSLGVPVAGVDRFALTQPLGVQDLLAAMRFAIQPLDDLNLAALLVSPLI
GWSQDDLFGFAHGRGKRALWEQLRAREGEVSAETMMALRGLLGMADFTTPYRFLDRVLSG
PVQGRRRLYARLGREARDPIDELLNQALAFERLHTPSLLAFLSEVEASSADIKRQTEARS
NVVRVMTVHGSKGLQAPIVILADATDDPVQRQRGFDVSLEGWDRLPVFGLPKEERHGRIA
EAHDAKARAEIEEHWRLLYVAMTRAEELLIVTGITKKEDRSLPELCWHAAVDGVMEGMGL
GWQDAGPRWGQKRVHAVNAKAWARQRDKPAVAVPAIAIPDWALKPAPEEARPPRPLAPSA
LGDDDVASPPQGGDGVVAVERGLLLHALFERLPPVAPARRRIAAAHWLTTQAAALDESAR
AKMVDEVIGVLEDPSHAALFGPGSLAEVPLSAVVNGVVVAGIVDRLLITDQAVTVVDYKT
GRHVPASAVDVQPAYLRQMAAYRDALAVIFPGRRVEAALLYTVAARLIRLDDALLDAHKP
GLTATKANLPGSALEPEAPTP
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgacgcggctccatgaccttgatcccggccagcaggcggcggcggagccgggcgaccat
gtctggctcggcgcgtcggcggggacgggcaagacgcaggtattgtcggcgcgcgtgctg
cggctgatgctcgcgggggtcgcgcccgatgcgatcctgtgcatcacctttaccaaggcg
ggcgccgccgaaatggcgcaccgcattcacgagcggctggcgctgtgggtgcggatggac
gatggcgatttgcggctcgacctgcgcgctttgggcgccgactggcagcagccgggcatt
ctcgaccgcgcgcggtcgctgttcgcaacggtgatcgacagcgcaccgggggcgatccgc
gtgcagacgatccacagtttctgtcagaccttgcttgcgagctttccgctcgaggcgaag
atcatgccggggttccgggcgctcgaagagggcgaggcggccgatttgcagcggcaggtg
atgggcaagctgctttcggaactgggcatcgagggcgatgcgatgcgccgccatgcggcg
atgctgtcgcggcggatggggcaggacgccgcgatgacgtttctcgtgcgctgcgcccac
gcctttgccgcgccgttccagacgcggatattgccgccgcgcgggcatgatctgcgcgcg
gcgctggggctgcccgatggcgatgcagaggcatggctcgtcacgcgccttggcgcgggt
gcgattgccgatgccgatatttccgcgattgccaccgtcgggcgcacctggggcagcgcg
acgggtgtcgcacgcgccgggacgatggcggcgtggctcgccgccgacccagccgcgcgc
gccacgatgctgggcgatgtgctgggcgcgatcgtcaaaaaggatggcgacatcgccgca
cattacctgacccccggcaagcagatgggcgactgccttggctcggccgaatgcgtcgcg
gcggcgattggcgagctgatggcgacgatgcgggcgatgcaggtcgccgacgatctggcc
gctgcgtgggatttggggagccgctttgccgaggcctatgcactggcgaagcgcgagggc
gggctggccgatttcgacgatctgatcgcgattgcggggtcgttgctgcggctcggccag
ttcggcgaatgggtgcgcttcaagctcgaccagcgcaccgaccatattttggtcgacgag
gcgcaggacaccaacacgcgccaatgggcgatcgtcgccgcgcttgccgaggagtttttc
gccggcacgggcgcgaaggacgagcggatccgcacgatgttcaccgttggcgaccgcaag
caggcgatcttcggctttcagggcaccgagcccgcggcgttcgaggcggcgcgcatccgg
ttcggcgaatgggccgagggcggtggccagccgttcgcgcaggtcgatctggtcaccaat
tatcggtcgagccccgcggtgctcgacgtagtcgatgaatgggtcggaagcggcggcgcc
gagctgatggggctggcgagcgatgagccgccgcatttgcccttccgcagcgagcatccg
gggcgtgtcgaactgtggcagccgttgcccgtgggcaaggcgcttgccgccgaggccggc
gatgaggaggccggcgacgaggatgcgagcgagggcggcgatccgctcgcccccgcgagc
gaccccgcgagcctgcgtctgtcgcgcgcgatcgccgacgaggtccgcgactggatcgaa
catggcaaggacgggcgcagcgtcgcgccgggcgatatattgatcctcgtccgccgccgc
cgcgacctcgcggcgcggatcgttgcgcggttgcaatcgctgggcgtgcccgtcgcgggt
gtcgaccgctttgcgctgacgcagccgctgggggtgcaggatttgctggcggcgatgcgc
tttgcgatccagccgctcgacgatctcaacctcgccgcgctgctcgtgtcgccgctgatc
ggctggtcgcaggacgatctgttcggtttcgcgcatgggcgcggcaaacgcgccttgtgg
gagcaactccgcgcgcgtgaaggcgaggtgtcggcggagacgatgatggcgctgcgcggg
ctgcttggcatggccgatttcacgacgccctatcgcttcctcgaccgcgtgctgtcgggt
ccggtgcagggacggcggcggctctatgcgcggctggggcgcgaggcgcgcgacccgata
gacgagctgctgaaccaagcgctcgcgttcgagcggttgcacacgccctcgctgctcgcc
ttcctgagcgaggtcgaggcgagcagcgccgacatcaaacgtcagaccgaagcgcgcagc
aatgtcgtgcgcgtgatgacggtgcatgggtccaaaggcttgcaggcgccgatcgtcatc
cttgccgatgcgaccgacgacccggtgcagcgccagcgcgggttcgacgtctcgctggag
ggttgggacaggctgccggtgttcgggctgccgaaagaggagcggcatgggcggattgcc
gaggcgcatgacgccaaggcgcgcgccgagatcgaggagcattggcggctgctctacgtc
gcgatgacgcgcgccgaggaactgctgatcgtcaccgggatcaccaagaaggaagatcgc
tcgctgcccgagctctgctggcacgcggcggtcgacggggtgatggagggcatggggctg
ggctggcaggacgccgggccgcgttggggacagaagcgcgttcatgcggtgaatgccaag
gcatgggcgcggcagcgcgacaagccggcggtggccgtgccggcgattgcaattcccgac
tgggcgctgaaacctgcccccgaagaggcgcgcccgccgcgcccgctggcgccgtcggcg
ctgggtgacgacgatgtcgcatcgccgccgcagggtggcgacggcgtggtggcggtcgag
cgcgggctgctgctccatgcgctgttcgagcgattgccgccggtggcgcccgcacggcgg
cgcatcgcggccgcgcattggctgacgacgcaggcggccgcgcttgatgaaagtgcgcgc
gcgaaaatggtcgacgaggtgatcggcgttctggaggacccctcgcatgcggcgctgttc
ggaccggggtcgctcgccgaggtgccattgtcggctgtggtcaacggcgtcgtcgtagcg
gggatcgttgaccggctcctcattaccgatcaggcggtgaccgttgtcgattacaagacc
gggcggcatgttccggcgagtgcggtcgacgttcagcccgcctatctccgccagatggcg
gcctatcgcgatgcgctcgcggtgatttttccgggccggcgcgtcgaggcagcgctgctt
tatactgtggcagcccggttgatccgcctcgacgacgccttgctcgatgcacacaagccg
ggcttgacggcaaccaaggcgaatttgccgggttcagcccttgagccggaggcaccgaca
ccctaa
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