Sphingopyxis fribergensis: SKP52_18960
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Entry
SKP52_18960 CDS
T03542
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sphk
Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphk03016
]
SKP52_18960
Enzymes [BR:
sphk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
SKP52_18960
Transfer RNA biogenesis [BR:
sphk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SKP52_18960
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-ProteinID:
AJA10661
UniProt:
A0A0A7PKQ7
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All DBs
Position
complement(4017823..4018440)
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AA seq
205 aa
AA seq
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MTVYFHEEDLPEGVLGSGAVAIDTETMGLNPLRDRLCLVQISDGSGDEHLVRFKPGSTYD
APVLKAILTDPNRLKLFHFARFDIAALQQALGVVTAPVYCTKIASKLIRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAELSDAQRDYAASDVRFLHAMKDILDMRLAREGRTELAQA
CFDFLPTRAALDLAGWPEVDIFAHT
NT seq
618 nt
NT seq
+upstream
nt +downstream
nt
atgactgtctattttcacgaagaagatttgcccgagggcgtgctgggttcgggcgcggtc
gcgatcgataccgagaccatgggcctgaacccgctgcgtgaccggctatgcctcgtccag
atcagcgacgggtcgggcgacgaacatctcgtccgtttcaaacccggcagtacgtatgac
gcgccggtgctaaaggcgatattgaccgaccccaaccggttgaaactgttccattttgcg
cgcttcgacatcgccgcgctgcagcaggcgctcggcgtcgtgacggcgcccgtctattgc
accaagatcgcctcgaagctgatccgcacctacaccgaccgccacgggctcaaggaattg
gtgcgcgaattgctgggccaggaagtgtcgaagcagcagcagtcgagcgactggggcgcc
gccgaactttccgatgcgcagcgcgactatgccgcgagcgacgtgcgcttcctgcacgcg
atgaaggatatcctcgatatgcggttggcgcgcgaagggcgcactgaattggcgcaggcc
tgtttcgatttcctgccgacgcgcgcggcgctcgacctggccggttggcccgaggtcgac
atcttcgcgcacacctga
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