KEGG   Sphingopyxis fribergensis: SKP52_18960
Entry
SKP52_18960       CDS       T03542                                 
Name
(GenBank) 3'-5' exonuclease
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
sphk  Sphingopyxis fribergensis
Brite
KEGG Orthology (KO) [BR:sphk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sphk03016]
    SKP52_18960
Enzymes [BR:sphk01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     SKP52_18960
Transfer RNA biogenesis [BR:sphk03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    SKP52_18960
SSDB
Motif
Pfam: DNA_pol_A_exo1 RNase_H_2 Beta-prop_Nup120_160
Other DBs
NCBI-ProteinID: AJA10661
UniProt: A0A0A7PKQ7
LinkDB
Position
complement(4017823..4018440)
AA seq 205 aa
MTVYFHEEDLPEGVLGSGAVAIDTETMGLNPLRDRLCLVQISDGSGDEHLVRFKPGSTYD
APVLKAILTDPNRLKLFHFARFDIAALQQALGVVTAPVYCTKIASKLIRTYTDRHGLKEL
VRELLGQEVSKQQQSSDWGAAELSDAQRDYAASDVRFLHAMKDILDMRLAREGRTELAQA
CFDFLPTRAALDLAGWPEVDIFAHT
NT seq 618 nt   +upstreamnt  +downstreamnt
atgactgtctattttcacgaagaagatttgcccgagggcgtgctgggttcgggcgcggtc
gcgatcgataccgagaccatgggcctgaacccgctgcgtgaccggctatgcctcgtccag
atcagcgacgggtcgggcgacgaacatctcgtccgtttcaaacccggcagtacgtatgac
gcgccggtgctaaaggcgatattgaccgaccccaaccggttgaaactgttccattttgcg
cgcttcgacatcgccgcgctgcagcaggcgctcggcgtcgtgacggcgcccgtctattgc
accaagatcgcctcgaagctgatccgcacctacaccgaccgccacgggctcaaggaattg
gtgcgcgaattgctgggccaggaagtgtcgaagcagcagcagtcgagcgactggggcgcc
gccgaactttccgatgcgcagcgcgactatgccgcgagcgacgtgcgcttcctgcacgcg
atgaaggatatcctcgatatgcggttggcgcgcgaagggcgcactgaattggcgcaggcc
tgtttcgatttcctgccgacgcgcgcggcgctcgacctggccggttggcccgaggtcgac
atcttcgcgcacacctga

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