Sphingopyxis fribergensis: SKP52_19655
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Entry
SKP52_19655 CDS
T03542
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K10941
sigma-54 dependent transcriptional regulator, flagellar regulatory protein
Organism
sphk
Sphingopyxis fribergensis
Pathway
sphk02020
Two-component system
sphk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SKP52_19655
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SKP52_19655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sphk03000
]
SKP52_19655
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
sphk02035
]
SKP52_19655
Transcription factors [BR:
sphk03000
]
Prokaryotic type
Helix-turn-helix
Other families
SKP52_19655
Bacterial motility proteins [BR:
sphk02035
]
Flagellar system
Flagellar assembly proteins
Others
SKP52_19655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
HTH_8
AAA_5
AAA_2
Mg_chelatase
AAA_16
AAA
AAA_7
IstB_IS21
AAA_19
AAA_33
TIP49
Motif
Other DBs
NCBI-ProteinID:
AJA10799
UniProt:
A0A0A7PLE0
LinkDB
All DBs
Position
complement(4155356..4156414)
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AA seq
352 aa
AA seq
DB search
MTLGHGNNAALEALIIGTSEAACRLREMIRRVARSNASVMLCGPSGSGKELVARAIHDEG
ARAGKAFSAINCGAIPGELIESELFGHEKGSFTGAHARRIGHFEATEGGTLFLDEIGDMR
FDMQVKLLRVLEDRTIVRVGSSDVKAVDVRVISATHQDLGAAIADGKFREDLFFRLGVVV
LQVPSLANRAEDIPALIRHFQRQMPADAKCRFDDAAMTLLMQHAWPGNVRELRNFVERAS
VLHGGETLGFEDVAMLLNPTAALAPRRAVPSSPAAVPASADDVAAAAPHAKTPAPGRPID
LKREIETIELEQIHVALDLADGIISEAARLLTLKRTTLIEKMRKYGVHQQAA
NT seq
1059 nt
NT seq
+upstream
nt +downstream
nt
atgacactggggcatggtaacaacgcagcgctcgaagcgctgatcatcggcacgagtgag
gccgcctgtcggctgcgcgagatgatccgccgcgtggcgcgttcgaacgcctcggtgatg
ctctgcggcccgtcgggctcgggcaaggaacttgttgcccgtgcaatccacgacgaaggc
gcccgcgccggcaaggctttctccgcgatcaactgcggcgcgatccccggcgaactgatc
gaatccgaacttttcgggcatgaaaagggcagcttcaccggcgcccatgcccgccgcatc
ggccatttcgaagcgaccgagggcggcacgctcttcctcgacgaaatcggcgacatgcgt
ttcgacatgcaggtcaaactgctccgcgtgctcgaagaccggacgatcgtccgcgtcggc
agcagcgatgtgaaggccgtcgacgtccgcgtcatttcggccacccaccaggatctcggc
gctgcgatcgccgatggaaaattccgcgaagacctgttcttccggctcggcgtggttgtg
cttcaggtccccagcctcgccaaccgcgccgaggatattcccgcactgatccgccatttc
cagcgccagatgcccgccgacgccaaatgccgtttcgacgacgcggcgatgacgttgctg
atgcagcatgcatggccgggcaatgtgcgcgaactcaggaatttcgtggagcgcgccagc
gttctccatggcggcgagacgctcggtttcgaggatgtcgccatgcttttgaaccccacc
gcagcgctggcgccgcggcgggctgtccccagcagccctgccgcagtgccggccagcgcg
gacgatgtggccgcggccgcgccgcacgccaagacgccggcgccgggccgcccgatcgac
ctcaagcgcgagatcgaaacgatcgaactcgaacagatccacgtcgcgctcgacctcgcc
gacggcatcatttcggaagcggcgcgcctgctcacgctgaagcgcaccacgctcatcgaa
aagatgcgcaaatatggcgtccaccagcaggccgcctga
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