Sphingorhabdus lutea: LPB140_00545
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Entry
LPB140_00545 CDS
T04602
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03410
Base excision repair
sphl03430
Mismatch repair
sphl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB140_00545
03430 Mismatch repair
LPB140_00545
03440 Homologous recombination
LPB140_00545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphl03400
]
LPB140_00545
DNA repair and recombination proteins [BR:
sphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LPB140_00545
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LPB140_00545
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LPB140_00545
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
APG61580
UniProt:
A0A1L3J8Z2
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Position
complement(99119..100885)
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AA seq
588 aa
AA seq
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MSFVLKIDQSLTGQKWLWRANGMNDRDAGFQPDDLVTQLLLSRGVPPEDLERHKKPTIRE
FMPNPSIFQDMDKAAARLAKAVKAQEKITIYGDYDVDGATSAAVLILLLRDLGLDAGYYI
PDRLMEGYGPSAEALVELHEQGNSLIVTVDCGAMAHAALSAAHDAGAEVIVVDHHKCSTQ
LPITSALVNPNRLDENDEAASFGHLAAVGMAFLLGAAIIRQLRGEGFFTSRKEPNLMALL
DIVALGTVADVAKLQGLNRAFVAQGLKIMARRQNIGLNALIEVSGLNRAPICSDLGFALG
PRINAGGRVGESDLGVRLLTTTDPDEAREIAIMLDGYNQERRAIEAMVQEEAEAELEKQH
NRSVLTLVGRGWHPGVIGIVAGRIKEKSGKPSIVIAVDEDGVGKGSGRSISGVDLGAAIM
SARDAGLLVAGGGHAMAAGLTIKADMVDAFAEYLDMQLASKISDARAESGLFIDAVLAPG
GLVPPLVDAMEEAGPYGMGWPGPRIVTGPVRIIKADVVGKDHLRMIVAGRDGKSFKAMAF
RQAESDMGQILLHGGKDTQYYFAGRLKIDDWGAQLKVEMHVEDAAAIK
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgttttgaaaatcgatcaatcgcttaccggtcaaaaatggctgtggcgcgca
aatgggatgaacgaccgtgatgcggggtttcaacccgatgatttggtcacccaattatta
ttatcacgcggtgtcccaccagaggatttggagaggcataaaaaacccaccatccgcgaa
ttcatgcccaacccatccatttttcaggatatggataaggccgctgcacgattggcaaag
gcggtaaaggcacaggaaaaaataaccatttatggcgattatgatgtcgatggcgcgacc
agtgcggcggtgctgatattattattgcgtgatttgggattggatgcgggatattatata
cccgatcgcttgatggagggctatggcccatcggcagaggcattggttgaattgcatgaa
cagggcaatagtttaatcgtcaccgtggattgcggggcaatggcccatgcggcattatct
gccgcgcatgatgcgggggcagaggtgattgtggtggatcatcataaatgttcgacccag
ctgcccattacgtcggcattggtcaatcccaatcgtctggacgaaaatgatgaggcggct
tcatttggccatttggccgccgtgggcatggcatttttattgggtgcggcgattattcgc
caattacggggtgagggattttttacgagccgaaaagagccaaatttaatggctttattg
gatattgtggcattgggcacggtggccgatgttgccaagcttcagggattaaaccgtgca
tttgtagcacagggtttaaagattatggcgcggcggcaaaatattgggctgaacgcctta
atagaggtaagcgggctgaaccgtgcgcccatatgttccgaccttggctttgcgcttggc
ccgcgtatcaatgctggcgggcgtgtgggcgaaagcgatttgggggttaggttattgacc
accacagaccctgatgaggcccgcgaaatcgccatcatgttggatgggtataatcaggaa
cgccgcgcgattgaggcaatggtgcaggaagaggccgaggcggagctggaaaaacaacat
aatcgcagcgtcctgacccttgtcgggcggggatggcatcctggtgttattggcattgtc
gcggggcggataaaggaaaaatcgggtaagcccagcatcgtcattgccgtggatgaagat
ggcgtgggcaagggatcgggccgttccatatcgggcgtggatttgggtgcggcgataatg
tccgcgcgggatgcgggattgttggtcgccggtggcggacatgccatggcggcgggattg
acgataaaggcggatatggtggatgctttcgccgaatatttggacatgcaattggccagc
aaaatctccgatgcccgtgctgaatccgggttgttcattgatgctgtgcttgcgccgggc
ggccttgtcccgccattggtggatgcgatggaggaggccggcccctatggcatgggttgg
cccggcccgcgcatagtcaccggccctgtccggattataaaggccgatgtggttggcaag
gatcatttgcggatgattgttgccggacgcgatggtaaatcatttaaggcgatggcattt
cgtcaggcggaatcggatatggggcaaatattgctgcatgggggaaaagacacgcaatat
tattttgccggacggcttaaaattgatgattggggcgcacagttaaaggttgaaatgcat
gtggaggatgcggccgccattaaatag
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