Sphingorhabdus lutea: LPB140_00720
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Entry
LPB140_00720 CDS
T04602
Name
(GenBank) hypothetical protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB140_00720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphl03019
]
LPB140_00720
Enzymes [BR:
sphl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB140_00720
Messenger RNA biogenesis [BR:
sphl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB140_00720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Extensin_1
AAA_19
UvrD-helicase
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
APG61608
UniProt:
A0A1L3J918
LinkDB
All DBs
Position
complement(132399..134405)
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AA seq
668 aa
AA seq
DB search
MKKVSDIVGTFPERESTIYMTYFSELGLAEPILKALAASDYSEPTPIQRQAIPALLEGRD
LCGIAQTGTGKTAAFTLPSLHHLANNVVPVPEKGCRMLILSPTRELAAQIAENVRKYGRN
LKFNVQCVFGGMPIYSQKKKLARGVDVLVATPGRLIDLIDQGAFHLNGVEIFVLDEADQM
MDMGFIHSLKQIDKMLPKQRQSLFFSATMPKAIEELGRRFLNNPVRVAVTPESTTAERVD
QYVTFVNQHEKNALLIHRLQNENVERALVFARTKHGADRIVRHLAGAKIRSAAIHGNKSQ
GQRTAAMQDFRSGEIKILVATDIAARGIDVPGVSHVFNFELPNVAEQYVHRIGRTARAGA
DGVAVSFCAKDERAYLRDIERLTKVKATIVELPENFRNIVENSPAPIAVKEQRGGRSLRG
GGEGRGEGRGGARGERSGGGRGRPDRARGDRPERGRGDRPERGAREEFRGKSHHRADGVG
RNDSGHGDWRPERMQGEGGGDRRPKLDAPRGDRSFGDRPRSDRPRSDRPRSDRPREDKPR
GDRPFGDRARSDRPREDKPRGDRPFGDRARSDRPREDRPRGDRPFGDRPRSDRPRSDRPR
SDRPREDRPRGDRPRGDRPDRPRSDRPREDRPRSDRPRGDRNDRPRSDKPRSDKPQAGKF
NNYVKRAR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaagtctcagatattgtcggcacattccccgaacgcgaaagcacaatatacatg
acttatttttctgaacttgggctcgccgagcccatccttaaggctttggctgcttctgat
tatagcgagcctacacccattcaacgccaagcaattccagcattattggaggggcgcgac
ctttgcggtatcgcccaaaccggtactggtaaaaccgcggcatttactttgccctcattg
caccatttggcgaataatgtcgtgcctgttcctgaaaagggatgccggatgcttatccta
tcgccgactcgcgaacttgccgcccaaattgcggaaaatgtccgcaaatatggccgcaac
ttaaaatttaatgtccaatgcgtttttggcggcatgcccatttacagccagaaaaagaaa
ttggcgcgcggtgttgatgttcttgtcgcgacaccgggccgcttgattgatttgattgat
caaggcgcgttccatttaaacggcgtggaaattttcgttttagacgaagccgaccaaatg
atggatatgggctttatccattcattaaaacaaattgataaaatgttgccgaaacagcgt
caaagcctgttcttctctgccaccatgccaaaggcgattgaggaattgggccgtcgtttc
ttaaacaatcctgtccgtgttgcggtaacccccgaatccaccacggccgagcgtgttgat
caatatgtgacctttgtgaaccagcatgaaaaaaatgcgctgttaattcaccgtttgcaa
aatgaaaatgttgaacgtgcattggtttttgcgcgcacaaaacatggcgcggaccgtatt
gtgcgccatttggcgggtgcgaaaattcgctctgctgccattcatggtaataaaagccag
gggcaacgtactgccgcgatgcaagatttccgcagtggcgagattaaaatattggtcgca
accgatattgccgcacgcggtattgatgtcccgggcgtaagccatgttttcaattttgaa
ttgcccaatgttgctgaacaatatgtgcaccgtattgggcgcacagcgcgcgccggtgcc
gatggcgtggcggttagtttctgtgcaaaggatgagcgggcctatttacgcgacattgaa
cgattgaccaaggtaaaggcaacaattgttgaattgcccgaaaatttccgcaatatcgtt
gaaaattcacccgcacctattgcggtgaaggaacaacgtggcgggcgcagcctgcgcggc
ggcggcgaaggtcgtggtgaaggacggggcggcgcacgcggcgaacgttccggtggcggt
agaggccgtcccgaccgtgcacgtggcgatcgtccagagcgcggccgcggtgaccgtcca
gaacgcggcgcaagagaagaatttagaggcaaaagccaccaccgcgccgatggcgttggt
cgtaatgacagcggccatggtgattggcgtcccgaacggatgcaaggtgaaggcggaggt
gatcgtcgtccaaaattagacgcgccacgcggcgatcgttcatttggtgatcgtccccgt
tcagataggccgcgttcagatcgccctcgttcggatagaccacgtgaagataagcctcgc
ggtgatcgcccatttggcgaccgcgctcgttcggatagaccacgtgaagataagcctcgc
ggtgatcgcccatttggcgaccgcgctcgttcggatagaccacgtgaagataggccacgc
ggcgaccgcccatttggcgaccgtccccgttcagatcgtcctcgttcagataggcctcgt
tcggatagaccacgtgaagatagacctcgcggtgatcgtccacgtggtgaccgtcctgat
cgtccccgttcagatagaccgcgcgaagataggccacgttcagataggcctcgcggcgat
cgcaatgatcgtccccgttcggataaaccccgttcggataaaccgcaggctggcaaattt
aacaattatgtgaaacgcgcccgttaa
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