Sphingorhabdus lutea: LPB140_05750
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Entry
LPB140_05750 CDS
T04602
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LPB140_05750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphl03400
]
LPB140_05750
Enzymes [BR:
sphl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LPB140_05750
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LPB140_05750
DNA repair and recombination proteins [BR:
sphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LPB140_05750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
APG63630
UniProt:
A0A1L3JES7
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All DBs
Position
1220003..1220815
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AA seq
270 aa
AA seq
DB search
MPELPEVETTINGLVHFLQGRRLTRVETRRDNLRWPFPPDLRQRMEGAFVTKLSRRAKYG
LIFTDRDDVMIFHLGMSGKWRVDVDEIEKHDHLLLGTDDGRLLALNDPRRFGSVDILPAS
EINEYPPFVKMGPEPLGGEFNAAMLHASLKDKKCTIKAALLNQNIVAGLGNIYVCEALYA
VGLHPQKLAYVIKINKIKALVEAIKEILERAIAAGGSSLRDFAAPDGELGYFSHQWSVYG
REGQQCKCGDIIIRITQQGRSSFLCPKCQK
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaattacctgaggtggaaacgacaataaacggattggtccattttttacagggc
cgacgtttgacaagggtggagacaaggcgcgataatttgcgctggccatttccgcctgat
ttacgtcaaaggatggagggcgcttttgtcaccaaattaagccgaagggccaaatatggc
ctaatctttaccgaccgcgatgatgtgatgattttccatttgggtatgtcgggcaaatgg
cgcgtagatgtggatgaaattgaaaaacatgatcatttattattgggaactgatgatggc
cgattattggcattaaacgacccgcgccgttttggcagtgtggacatattgcccgcgtct
gaaataaatgaatatccgccctttgtgaaaatggggcctgagccattgggcggtgaattt
aatgccgccatgctgcacgcgtcgttaaaagacaaaaaatgcaccataaaggcggcgctg
cttaaccaaaatattgtcgcggggcttggcaatatttatgtatgtgaggcattatatgcc
gtgggtttgcatccacaaaaattggcttatgtcattaaaataaacaaaattaaggcgttg
gtggaggcgataaaggaaattttggaacgtgctattgccgctggtgggtcgtctttacgc
gattttgccgcgccggacggggaactgggatatttttcgcaccaatggagcgtttatggc
cgcgaaggtcagcaatgtaaatgtggtgatattattattcgcatcacacagcagggcagg
tcgagttttttatgccccaaatgccaaaaataa
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