Sphingorhabdus lutea: LPB140_05930
Help
Entry
LPB140_05930 CDS
T04602
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB140_05930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphl03019
]
LPB140_05930
03009 Ribosome biogenesis [BR:
sphl03009
]
LPB140_05930
Enzymes [BR:
sphl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LPB140_05930
Messenger RNA biogenesis [BR:
sphl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB140_05930
Ribosome biogenesis [BR:
sphl03009
]
Prokaryotic type
rRNA processing factors
LPB140_05930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Anti-TRAP
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
APG63635
UniProt:
A0A1L3JES1
LinkDB
All DBs
Position
complement(1254022..1257003)
Genome browser
AA seq
993 aa
AA seq
DB search
MKTRMLIDALHREETRVAVVTGNKIEEFDFESEEHKQLKGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPKEDRERLLAEEAEAAAEEASMREQEEMEEAGEVSPSYE
DEDEDELIEIESDERVDTIDINEGETGDSDDDGDDEDDASQDDEASHSENGSHQDEDDVN
SEDGSDEDGVDGENRQNRSRRGRGRGRGGRRGNNNRENGQKGGRQNGRGNGRSAPKASDE
MRAKRIAIRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHG
GGISRKISNSSDRKRLKSIVSEMKLPSTMGCIIRTAGMSRTKVEIKRDFTYLARLWDEVR
EKTLKGAAPTLIHSDSDLIKRAIRDIYNRDIDEVLVEGEDSFKVARNFMKLLMPSHARKV
QLYSDATPLFQVHGVEDQLNAMYQPVVQLKSGGYIVINPTEALVSIDINSGRSTKEHGIE
ATALSTNLEAAREIARQLRLRDMAGLVVIDFIDMEHHSNNRKVERAMKDALKNDRARIQV
GRISSFGLMEMSRQRLRTGVLEASTRECPHCEGTGLVRTASSSALSALRMVEDEAAQGKG
SIISLSASQEAAIYVLNNKRHELANIEDRFGVRISVTPNGEVEGAKMTVSSSGPPSTRRP
IAKAPIVEEFDDEEEVEAENNQRSEGGHRHDDQDDRGNDQNGEPRKKRRRRGRRGGRDRN
NDAQQDRNGHDDAGSNQAEQAQSGDNLAANNDEQSQKPRRSRRRKNANEDANNDGRNNQE
HGNDAAGKEVQANDGSSDDENGAAKPKARRKPSAARAKKVKEEAVSTNEDTAESKPKTRR
ASTAKKKAETAAKEAATDAATNSASAISDNGEEAGDKPAAKKPARTRKKAEPKAKATKTA
DSNDVSEKAAKPKASAAAKKPATRKKAAPKTTGKAADKDAEKTVKPAKAAKAEKAEKPKK
AAEKKVETEEADSAANTEEKGPRKGGWWQRTFG
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgcgtatgttaatcgacgcgctgcaccgggaagaaacccgcgtagcagtagta
acaggaaataaaattgaagaatttgattttgaatcagaggaacataaacagttaaaaggt
aatatctaccttgccaaagtaaccagggttgaaccatcattgcaggcagcttttgtcgat
tatgggggcaatcgtcacggatttttggctttttctgaaatccatcctgattattatcaa
atccccaaagaagatcgcgaacgtttattagccgaagaggcagaggctgcggccgaagaa
gcatcaatgcgcgaacaagaggaaatggaagaagccggtgaggtttccccatcctatgaa
gatgaagatgaagatgagcttatcgaaattgaaagcgatgagcgcgtggacactatcgat
attaacgaaggcgaaaccggcgatagcgatgatgatggcgatgatgaagatgacgcatcc
caagatgatgaggcgtctcatagtgaaaacggctctcatcaagatgaagacgacgtaaat
agcgaagatggcagcgatgaagatggcgtagatggcgaaaatcgccaaaatcgcagccgc
cgtggtcgcggacgtggccgtggtggtcgccgcggtaataataaccgtgaaaatggccaa
aaaggcgggcgccaaaatggacgcggcaatggccgttctgcgccaaaggccagcgacgaa
atgcgcgcaaagcgcattgcgatacgccgccgttataaaattcaggacgttatccaacgc
cgtcaggttttattggttcaagtcgtcaaagaagaacgcggtaataagggcgcggcgctg
accacttatttatcattagcgggtcgttattgcgtattaatgcccaataccagccatggc
ggcgggataagccgcaagattagcaattcatccgatcgcaaaagattaaaatcaattgtg
tcggaaatgaaattgcccagcaccatgggctgtatcatccgcacggcgggcatgtcccgt
accaaggtggaaattaagcgcgactttacttatttggcgcgtttatgggatgaggtgcgc
gaaaaaacattaaaaggcgcagctcccactttaatccattcggacagcgatttaatcaaa
cgtgcgatacgcgatatttataatcgtgatattgatgaggttttggttgagggtgaggat
agtttcaaggttgcgcgcaatttcatgaaattattgatgcccagccatgcccgcaaggtg
caattatacagcgatgcaaccccattattccaagtacatggggtggaggatcaattaaac
gccatgtaccaaccggtggtgcaattaaaatctggcggttatattgtcatcaacccgacc
gaggcgctggtttcaattgacattaactctggccgttcgaccaaagaacatgggattgag
gccaccgcgctgtccaccaatttagaggcagctcgtgaaattgcccgccaattgcgtctg
cgcgatatggcaggtttggtggtcatcgattttatcgacatggaacatcacagcaataac
cgcaaggttgagcgcgcgatgaaggatgcgttgaaaaatgatcgcgcccgcatacaggtt
ggccgcatttccagctttggtttaatggaaatgtcacgccaaaggctgcgcaccggtgtg
ttggaggcatcgacccgcgaatgcccacattgtgaaggaacaggattggtgcgcaccgca
tcttcctctgctctatccgccttgcggatggttgaggatgaagctgcacaaggcaagggc
agcattatcagcctgtcggcaagccaagaggccgccatttatgtgttgaacaataaacgt
catgaactggccaatattgaggatagatttggcgttcggatttcggtcacaccaaatgga
gaggttgaaggcgcaaaaatgacggtcagctcatctggcccgccatcgacccgccgcccc
attgccaaagccccaattgtcgaagaatttgacgatgaggaagaagtagaggcagaaaat
aatcagcgttcagaaggcgggcatcgccatgatgaccaagatgatcgcggcaatgaccaa
aatggcgagccgcgcaaaaaacgtcgtcgtcgtggccgccgtggcggacgtgatcgcaat
aatgatgcgcagcaggataggaatggccatgatgatgcaggctccaatcaagccgagcag
gcgcaatcgggcgataatcttgccgccaataatgatgaacaatcgcaaaaaccgcgccgt
tcgcgccgccgtaaaaatgcaaatgaagatgccaataatgatggccgcaataatcaagag
catggcaatgatgcagcgggcaaagaggtgcaggccaatgatggaagcagcgatgatgaa
aatggtgcagcaaagccaaaggcacgccgtaagccatctgctgcacgtgccaaaaaggta
aaggaagaagccgtatcaaccaacgaagatacagcagaatccaaaccgaaaacgcgccgc
gcatcaaccgcgaaaaagaaagctgaaactgcagcaaaagaagctgcaactgatgccgca
acaaatagcgcatcggcaatatcggacaatggcgaagaagctggcgacaagccagcggcg
aaaaagcctgcccgcacccgtaaaaaggctgaacccaaggcaaaggctacgaaaaccgcc
gattccaacgatgtaagcgaaaaagcggcaaagccaaaggcaagcgccgccgcgaaaaag
ccagcaacacgtaaaaaagctgcgcctaaaaccaccggcaaagcggcggataaggatgca
gaaaaaacggtgaagccagcaaaagccgcaaaggcagaaaaagccgaaaagcctaaaaag
gcggcagaaaaaaaggtcgagactgaagaagctgatagtgccgcaaatacagaagaaaaa
ggcccgcgcaagggcggatggtggcaacgcacctttggctaa
DBGET
integrated database retrieval system
