Sphingorhabdus lutea: LPB140_07595
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Entry
LPB140_07595 CDS
T04602
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB140_07595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphl03019
]
LPB140_07595
03016 Transfer RNA biogenesis [BR:
sphl03016
]
LPB140_07595
Enzymes [BR:
sphl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LPB140_07595
Messenger RNA biogenesis [BR:
sphl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LPB140_07595
Transfer RNA biogenesis [BR:
sphl03016
]
Prokaryotic type
tRNA degradation factors
LPB140_07595
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
S1
CSD2
Motif
Other DBs
NCBI-ProteinID:
APG63693
UniProt:
A0A1L3JF64
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All DBs
Position
1599050..1601365
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AA seq
771 aa
AA seq
DB search
MREHIDLTDSKKPKSGADHEGLPTAKQIIKFIEEYDGNAGKREIAREFGLKGQRKILLKA
LLKDMTDDGLINMAPGRAFHKMGGLPKVTVLKIVAIEGNAPIAIPEKWEAEGKPAPQLRV
QERGKSMRLRVGDRILARTEERGQGWFAFAIKKLAEADQMIMGMVQILPNGRQYLQPVDK
RNRNNFAISGGVEAKDGQLVLAELKGRSHHKKAHIEQILGDPFEGASLSMIAVNKFGIPH
HFNGRTEKEAEKISKSSFGKRTDLRHIPFVAIDPRDARDFDDAIWAAPSTSPDNIGGFDA
IVAIADVSFYVRPGNELDIEARKRGNSVYFPDMVVPMLPHILSSGMCSLKQGENRAAMAC
HLVVDKNGKVTSWRFERALIKLSANIPYEDAQAAIDGVKPHEMTETALRPLWDCWALLSK
ARARREPLAIDMPERQVKINEQGEIVDISVRERLDAHMLVEDFMIAANVAAAKALETKKA
SVVYRVHEEPSREKIIALKEFLASLEIPLALGQVIKPSLFNNMLAKVDDDLIKPQIMEAV
LRSQMQAYYGPKNMGHFGLSLGSYAHFTSPIRRYADLLVHRSLVDAYGLFTNEDGSNDGT
GLAPSDKNALDKICEKISVFERRAMEAERETIDRYVAAYMVNFVDKVVETRITSVKNFGF
FATVKDIGGDGIVPISSLGSEYFHYDEAEQALYGEKSRTVYKVGQIINLRVMEANVATGG
IKFGILHEDYSNEEGGNSRNNKSSKPKMAGKYKAGARGRPANIRHKGRRRK
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
ttgcgagagcatattgatttgaccgatagtaaaaaaccaaaaagcggcgccgatcatgaa
ggattgcccactgcaaagcaaatcatcaaatttattgaagaatatgatggaaatgcaggc
aaaagggaaatcgcccgcgaatttggtttaaagggtcagcgtaaaattttgctaaaggct
ttgttaaaggacatgaccgatgatggcctgattaacatggcaccgggcagggcgtttcac
aaaatgggcggcctgcccaaggttaccgtgcttaaaattgtagcgattgagggtaatgcg
ccaattgccattcccgaaaaatgggaagcggagggcaagccggccccgcaattacgtgtt
caagaacgtggaaaatcaatgcgtttgcgcgttggtgaccgtattttggcacgcacagaa
gagcgggggcagggctggttcgcatttgccattaaaaaattggctgaggcggatcaaatg
ataatgggtatggtgcaaattttgcccaatggccgccaatatttacaacctgttgataaa
agaaaccgaaataattttgcaatttcgggcggggtagaggcaaaggatggtcaattagta
ttggccgagttaaagggccgaagccaccataaaaaggcgcatattgaacaaattttgggc
gatcctttcgaaggggccagcctgtccatgattgcggtgaataaatttgggataccgcat
cattttaatggccgcaccgaaaaagaagccgagaagattagcaaaagctcctttggcaaa
aggacggatttacgtcatatcccatttgtagcaattgatccacgtgatgcgcgggatttt
gatgatgccatttgggctgcgccgtcaacatcaccagacaatattggcggttttgatgcg
attgtagcgattgcagatgttagtttttatgtgcgcccgggaaatgagttggatattgag
gcacgaaagcgcggcaatagtgtttattttcccgacatggtcgtgccgatgctgccccat
attttatcatcgggcatgtgttcgttaaaacagggcgaaaaccgtgcggcaatggcatgt
catttggtggtcgataaaaatggcaaagtgacgtcatggcgttttgaacgcgccttaatc
aaattatctgccaatatcccttatgaggatgcacaggccgccattgatggcgtaaaacca
catgagatgactgaaacagcgctccggcccttatgggattgttgggcattattgtcaaaa
gcgcgggcaaggcgagaaccattggccattgatatgcccgaacgtcaggttaaaattaac
gaacagggtgagattgtcgatatttcggtgcgcgaacgattggacgcgcatatgttggtt
gaggattttatgattgccgccaatgttgccgcggccaaggcattagagacgaaaaaagcg
tctgtagtttaccgtgtgcatgaagaaccatcacgagagaaaattattgcgttaaaggag
tttttggcaagtctggaaattccactcgcgcttgggcaggtaataaaaccaagtttattc
aacaacatgctagccaaagttgatgatgatttgattaagccgcaaattatggaagcggta
ttgcgtagccagatgcaggcatattatgggcccaaaaatatggggcattttggattgtcc
cttggcagctatgcccattttaccagtccaattcggcgttatgctgatttattagtgcat
cgttctttggttgatgcctatgggctatttacaaatgaagatggcagcaatgatggtacg
ggattagcaccatcggacaaaaatgcgctggataaaatttgtgagaaaataagcgttttt
gaacgccgcgcaatggaagccgagcgagagacaattgatcgttatgttgccgcctatatg
gtcaattttgtcgataaagttgtcgaaacgcggatcacatcggttaaaaatttcggtttt
tttgccacggtaaaggatattggcggcgatggtattgtgcccatttcttcgctgggaagt
gaatatttccattatgatgaagccgaacaggcgctttatggcgaaaaaagccgcactgtt
tataaggtggggcaaataataaatttacgagtgatggaggcaaatgtcgccacgggcggt
attaaatttggtatattgcacgaagattatagcaatgaagagggtggaaattcacgaaat
aataaatcatcaaaacccaaaatggccgggaaatataaggccggggcgagggggcgtccg
gccaatattcgccataaaggacgcaggcgtaaataa
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