Sphingorhabdus lutea: LPB140_08040
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Entry
LPB140_08040 CDS
T04602
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LPB140_08040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphl03021
]
LPB140_08040
Transcription machinery [BR:
sphl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LPB140_08040
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
APG62747
UniProt:
A0A1L3JC73
LinkDB
All DBs
Position
1693518..1695545
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AA seq
675 aa
AA seq
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MAKKPVNSKSTQDKDAPLIDLNEASVKKLITRAKKRGYITYDEINEALPQDQMTSEQIED
VMSAISEMGVNIVESEDDAAEENDDDGIETADDDSPKKSAPAATAVKKAANDRTDDPVRM
YLREMGAVELLSREGEIAIAKRIESGRDTMILGLCESPITFHAIIDWSNALNEGEMQLRE
ILDLDAMLSKEPAPENLEDDAEDDGEISEKTAGPSYKDDDDVEDEEDDIIDDDEDEEAAM
RRKRRAEEEEEEDNTLSLAQMEETLKPAALEKFSTITKLFGKFSKAQEKRMIALANGEEL
STASERSYQNMREQLTAEVESVQFHASKIEFLVDQLYSFNRRLTALGGQMLRLAERHKVP
RKQFLDSYMDHEMDENWLSDVSKIDKKWAKFAENEAVSVERIRTEISDISAATGMSLGEF
RRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREP
TPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQA
NLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKL
KHPSRSRKMRSFLDQ
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
gtggctaaaaaacctgttaattcaaaatctactcaggataaagatgcgccgttaattgat
ttgaacgaggcgtcagtaaaaaagttaatcactcgtgcaaaaaagcgcggctatatcacc
tatgatgagataaatgaggcattgcctcaagaccaaatgacgtcagagcaaattgaagat
gttatgtccgccatttccgaaatgggcgtaaacatagttgaaagcgaagatgacgcagcc
gaagaaaatgatgatgacggtattgaaaccgccgatgatgattctcctaaaaaatctgcg
cccgccgcaacagctgtaaaaaaagccgccaatgaccgcaccgatgatccggtccgcatg
tatttgcgcgaaatgggcgcggttgaattattaagccgtgagggcgaaatcgccattgca
aagcggattgaatctggccgtgacacaatgattttgggactttgtgaaagcccgattaca
tttcatgccattattgattggtcaaatgcgctgaatgagggcgaaatgcagctgcgtgag
attttggatcttgacgcaatgctatccaaagaacccgcgcccgaaaatttagaagatgat
gccgaagatgatggcgaaattagcgagaaaaccgctggcccatcatataaggatgatgat
gatgtagaggatgaagaagacgacatcattgacgatgatgaagatgaagaagcagccatg
cgccgcaaacgccgcgcagaggaagaagaggaagaggataacaccctttcgcttgcccaa
atggaggaaacattaaaaccggcggcgcttgaaaaattctccaccatcacaaaattattt
ggcaaattttcaaaagcacaggaaaagcgcatgattgcgttggccaatggtgaggaatta
tccaccgcatccgaacgcagttatcaaaatatgcgcgaacaattgaccgcagaggttgaa
agcgtgcaattccacgccagcaaaattgaatttttggtggaccagctttattctttcaac
cgccgcttaaccgcgcttggcggccagatgctgcgccttgccgagcgtcataaagtgccg
cgtaaacaatttctggattcctatatggatcatgaaatggatgaaaattggctgtccgat
gtcagcaaaattgacaaaaaatgggccaaatttgcggaaaatgaggctgtgagcgtagag
cgcattcgcaccgaaatttccgacatttctgccgccaccggcatgtcacttggtgagttt
cgccgtattgtgaacatggtgcaaaaggcggagcgcgaagcacgtattgccaaaaaagaa
atggtggaggccaatcttcgtttggttatttccatcgccaaaaaatataccaatcgcggc
ttgcaattccttgaccttattcaagaaggcaatatcggcctgatgaaggcggtagataaa
tttgaatatcgccgtggttataaattttccacctatgccacatggtggataagacaggcg
attacccgttccatcgcggatcaggcccgcaccattcgtatccccgtgcatatgattgag
accattaacaaattggtccgcacatcacgccaatttttgcatgaacagggccgcgaaccc
acaccagaggaaatggcagagcgtctttccatgccattggaaaaagtacgcaaggtgatg
aaaattgccaaagaaccgattagccttgaaacacccattggtgatgaggaagattcgcat
ctgggtgattttattgaggataaaaatgcgattatccccgttgacgcggcgatacaggcg
aatttgaaagaaacggttacccgcgttttggcctcgctcaccccgcgtgaggaacgggtg
ctgcgcatgcgttttggtattggcatgaacaccgaccatacattggaggaagtgggccaa
caatttagcgtgacccgcgaacgtatccgccaaattgaggcaaaggccctgcgtaaatta
aaacatcctagccgctctcgaaaaatgcgcagcttcctggatcaataa
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