Sphingorhabdus lutea: LPB140_11015
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Entry
LPB140_11015 CDS
T04602
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sphl
Sphingorhabdus lutea
Pathway
sphl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LPB140_11015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphl03021
]
LPB140_11015
03400 DNA repair and recombination proteins [BR:
sphl03400
]
LPB140_11015
Enzymes [BR:
sphl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LPB140_11015
Transcription machinery [BR:
sphl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LPB140_11015
DNA repair and recombination proteins [BR:
sphl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LPB140_11015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
APG63227
UniProt:
A0A1L3JDK5
LinkDB
All DBs
Position
2319460..2323698
Genome browser
AA seq
1412 aa
AA seq
DB search
MNELSKFNNPMAKPETFDEIQIGLASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEHYIVTEPGLTALEKFQLLTEDELLEAQDEYGEDAFTAG
IGAEAVKVMLMDLDLERERDDLLEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMIL
DIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRML
QESVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYSRLDAKGLSMTLKQAKKWVEKERKEVWDILEEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGEGMLLTDMAEVHQALEV
GAVTLHSKIISRVPQTDEDGKTYLKRFNTTPGRMLLGECLPKSHKVPFDIVNTLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMGLGFRHAFKAGISFGKDDMIIPEEKDGMVEDTRAVV
ADFEQQYQDGLITQQEKYNKVIDAWSRCGDLVAGAMMEKLKATPKDENGREAPINAIYMM
AHSGARGSPAQMKQLGGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCTIVENDCGTERALEMRAIVQGGSTIASLGDRVLGRTTA
EDIVGSDGKIAIKAGTLLDEKAISLMEEIGLQSLKIRSPLVCESKVGVCGTCYGRDLARG
TPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEKSNIEASSAGTIELRELPTIV
DKRGRRLAMARSGEVVVLDKEGREMEMHRIPYGAHILHDHGEKVNVGDRLVEWDPFTMPL
ITEKPGIVKYQDLADGKTLAEQTDEATGIAQRVVTEYREAGRSVKEDLRPRLTLLDDESG
EAARYLLAVGTMLSVEDGQRVEAGDVLARVTRESAKTRDITGGLPRVAELFEARKPKDNA
VIAKISGRIEFVRDYKAKRKIAIVPEEGETVEYLIPKIKVLDVQEGDMVRKGDNLVSGSP
DPHDILEVLGVEALAEYLCAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITEGGDTVLL
AGEQVDREEMEEVNAKLAKGKKPAEGHPILLGITKASLQTRSFISAASFQETTRVLTQAA
VEGKKDILTGLKENVIVGRLIPAGTGAAMNRIRVTANSRDAALRAQYKKLQDAIVAEEES
KAAAKADNSPAQEEVAVAEAVIVETAADETEG
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactaagcaaatttaacaacccaatggcaaagcccgaaacatttgatgaaatt
caaatcggcctcgcctcgcctgagcgcattcgcagctggtcatttggtgaaattaaaaag
cctgaaaccattaactatcggacgtttaagcccgaacgtgacggtcttttctgcgcccgt
atttttggccctgtaaaggattatgaatgcctatgcggtaaatataagcgcatgaaatat
aaaggcgttgtatgcgaaaaatgcggcgttgaggttaccgttaccaaggttcgccgtgaa
cgtatgggccatattgagcttgccgcgccggttgcccatatttggttcttaaaatcattg
ccatcgcgtattggtttgctgcttgatatgcagttaaaacagttggagcgcgtgctttat
tttgaacattatattgttacagaacccggtctgaccgcattggaaaaattccaattattg
accgaagatgagctattggaagctcaagatgaatatggtgaagatgccttcaccgccgga
atcggcgctgaagcagttaaagtcatgttgatggatcttgatctggagcgtgaacgtgat
gatttgttagaagaattggcaaccaccaaatctgaactaaaaccaaagaaaatcattaaa
cgtttaaaggtcgtggaaagctttatcgattcaggaaaccgtcctgaatggatgattttg
gatattgttccggttattccacccgaactgcgcccgcttgttccattggatggtggtcgc
tttgcgacatctgaccttaacgatttatatcgccgtgttatcaaccgtaataaccgtttg
aagcgtttgattgagcttcgtgcgcccgacattatcgtgcgtaacgaaaaacgtatgttg
caggaatcggttgatgcattgttcgacaatggccgccgtggccgcaccattaccggcgcg
aataaacgtccattaaaatcgctttccgacatgttaaagggtaagcaaggccgtttccgt
caaaatcttcttggtaagcgtgttgactattcgggtcgttctgtgattgttaccggtcct
gaattgaaattgcatcaatgcggtctgcccaagaaaatggcgttggaattgttcaaacca
tttatttactcccgtttggacgcaaagggtctttccatgaccttgaaacaagcgaaaaaa
tgggtggaaaaagaacgtaaagaagtttgggatattttggaagaagtcatccgcgaacat
cccgtgcttttaaaccgtgcgccaacgcttcaccgcttggggattcaggcatttgaacct
gtgctaatcgaagggaaagcaattcagcttcacccgctggtctgctctgcatttaatgct
gactttgacggtgaccaaatggcggtccacgttccattgagcctagaggcgcaattggaa
gcacgtgttttgatgatgtccactaacaacatcttgtcacctgcaaatggtaaaccgatt
attgttccgtcacaggatatggttctgggtctttattatctatccatggaccgtgaaggt
gaaccgggcgaaggcatgttgttgaccgacatggccgaagtgcatcaggcattggaagta
ggcgcggtgacgctccactccaaaattattagccgcgttccacaaaccgatgaagatggc
aaaacctatttgaaacggtttaacacgacccctggccgtatgcttttgggtgaatgcttg
ccaaaatcacataaagtgcccttcgatatcgtcaacacattgctgaccaagaaagaaatt
ggtgatgtgattgaccaagtttatcgtcatactggccaaaaagacacggtgctatttgcc
gatgcgattatgggccttggctttagacatgcgtttaaggcgggtatttcctttggtaag
gatgatatgatcattccagaggaaaaagacggcatggtagaggatacacgcgccgttgtt
gctgattttgaacaacaatatcaggacggccttattacccagcaagaaaaatataataag
gtgattgacgcgtggagccgttgtggtgaccttgtcgccggcgccatgatggaaaaatta
aaagccacgccaaaggatgaaaatggccgtgaagcaccgattaacgccatttacatgatg
gcccactccggtgcgcgtggttcgccagctcagatgaaacagcttggcggtatgcgtggt
ttgatggccaagccatcgggtgaaattattgaaacaccgattatttcaaactttaaagaa
ggtttgacggttcttgaatattttaactcaacccacggtgcacgtaaaggcttggccgat
accgcgctgaaaaccgctaactcgggttatttgacccgccgtttggttgacgtgtcacaa
gattgcaccattgttgaaaatgattgcggcaccgaaagagcgcttgaaatgcgggcaatt
gttcaaggtggttcaaccatcgcatcattgggcgaccgcgtacttggccgcaccaccgcc
gaagatattgtcggcagcgatggcaaaattgccattaaagcaggtacattgctcgatgaa
aaagccattagtttgatggaagaaatcggcctacaatcgcttaaaattcgctcacctttg
gtctgcgaatctaaagtcggcgtttgcggcacatgttatggccgtgaccttgcccgcggg
acaccggtaaatattggtgaagccgttggcgttattgcggcgcaatcaattggtgaacca
ggaacgcagctaaccatgcgtactttccacattggtggtgcggctcagttgaatgagaaa
tcaaatattgaggcatcatcggctggtacaattgaacttcgcgaattgccaacaatcgtt
gacaaacgtggccgccgtttggcaatggcgcgttctggcgaagtggttgttttggataaa
gaaggccgtgaaatggaaatgcaccgtattccttatggtgcgcacatcctgcatgatcat
ggtgaaaaggtaaatgttggcgatcgcttggttgaatgggatccattcaccatgccgctt
atcaccgaaaaaccaggcattgtgaaatatcaagatttggccgacggtaaaacattggcc
gaacaaaccgacgaagcgaccggtatcgcgcagcgcgttgttaccgaatatcgtgaggcg
ggccgttctgttaaggaagatttgcgtcctcgcttgaccttgcttgacgatgaaagcggc
gaagcggcgcgttatttgctggccgttggcacgatgttgtcggttgaggatggccaacgg
gttgaggcaggtgatgttcttgcccgtgtgacccgcgaatctgcgaaaacacgtgatatt
accggtggtttgccacgtgttgctgaattgttcgaagcacgtaagccaaaggataatgcg
gttattgccaaaatctctggacggattgagtttgtccgcgattataaagcaaaacgtaaa
atcgcaattgttcctgaggaaggtgaaacagttgaatatttgattccaaaaatcaaagta
ttggacgtgcaagaaggcgatatggtccgcaagggcgataatctggtctctggttcaccc
gatccacatgatattcttgaagtattgggcgtggaggctttagccgaatatctatgcgcc
gaaattcaagaggtttatcgtctgcaaggcgtgaaaatcaacgataagcatattgaggtc
atcgtgcgtcaaatgttgcaaaaagttgaaatcaccgaaggtggcgacactgttttgctt
gccggtgagcaagtggaccgtgaagaaatggaagaagtgaacgccaaattggcaaagggt
aaaaaacctgccgaaggtcaccccatcctattgggtattaccaaggcaagcctacaaacc
cgcagcttcatctccgccgcctctttccaagaaaccacccgcgtattgacgcaggctgcg
gttgaagggaaaaaggatatattgaccggattgaaagagaatgtgattgttggccgctta
atccccgcagggacaggtgccgccatgaaccgcatccgcgttacggcaaatagccgcgat
gccgcgcttcgtgctcaatataaaaagttgcaagacgcaattgttgctgaggaagaaagc
aaggctgctgccaaggcagataatagcccagcacaagaagaagttgctgtcgcagaagct
gttattgttgaaacagcagccgatgaaacagaaggctga
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