Sphingomonas sp. MM-1: G432_00240
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Entry
G432_00240 CDS
T02498
Name
(GenBank) beta-lactamase domain-containing protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sphm
Sphingomonas sp. MM-1
Pathway
sphm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
G432_00240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphm03019
]
G432_00240
Messenger RNA biogenesis [BR:
sphm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
G432_00240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
Lactamase_B_2
RNase_J_C
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AGH47778
LinkDB
All DBs
Position
49265..50905
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AA seq
546 aa
AA seq
DB search
MTTPGNELLFLALGGSGEIGMNVNLYGTQGKWLMVDLGLTFADPAYPGIDLILPDLEFIE
QRAKDLVGIVLTHGHEDHIGAIPYLAADLGVPLYATPFTAGLIRGKLDEEGLGDKVKLHV
IDQEGSFRVGPFGVSYIPLAHSIPEGNALLIDTPYGRIFHTGDWKLDDEPLLGTPSTAAE
LEAIGDEGVLALVCDSTNVFNEDASGSEAAVREGLDGVIAEAKGRVLVTTFASNAARVQT
LGQVARDTGRQLCVAGRSLDRIIKVAKACGYLGDFPDTVDFETAMRLPPSEVMIVATGGQ
GESRAALARIAFDSHPIKLSEGDTVVFSSKQIPGNEIAIGRIQNRLAERGILMVTDRQAH
VHVSGHPGRPELELMYKWIRPEIILPVHGEMRHMAEQARFAAACGVPRGIVQQNGQVIRL
APDGPELVGHERTGRLVLDGDVILPADGATLNERRRISLHGFISATVVLDARGNVRGEPA
IAIQGVPVEEDREDFLADARLAAAEAATDGPKDEAKLREAIRLAVRRRATQWTGKKPIVD
VSIIRV
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
gtgacgacacccggtaacgaattgcttttcctcgccctcggcggctccggggagattggc
atgaacgtcaatctctacggcacgcagggcaagtggctgatggtcgatctcggccttacc
tttgccgacccggcctatccgggcatcgacctgatcctgccggatctggagttcatcgag
cagcgggccaaggatctcgtcggcatcgtcctcacccacgggcatgaggatcatatcggc
gccatcccctatctggcggcggatctgggcgtgccgctctatgccacgcccttcaccgcc
ggcctgatccgcggcaagctggacgaggaggggctgggcgacaaggtgaagctgcatgtg
atcgatcaggaaggcagcttccgggtcggcccgttcggcgtcagctatatcccgctcgcc
cattcgatccccgaaggcaatgcgctgctgatcgatacgccctatggccgcatcttccac
accggcgactggaagctggacgacgagccgctgctcggcacgccatccaccgccgccgag
ctggaggcgatcggcgacgagggcgtgctggcgctggtctgcgattccaccaatgtcttc
aacgaggacgcctcgggctccgaagcggcggtgcgcgaggggctggacggggtgatcgcc
gaggcgaagggccgcgtgctcgtcaccaccttcgcctccaacgcggcgcgggtgcagacg
ctggggcaggtggcgcgggataccggccgccagctctgcgtggccggccgctcgctggat
cggatcatcaaggtcgccaaggcgtgcggctatctgggcgattttcccgatacggtggat
ttcgaaaccgcgatgcggctgccgccgtccgaggtgatgatcgtcgcgactggcgggcag
ggggaatcgcgcgcggcgctggcgcggatcgccttcgacagccacccgatcaagctttcg
gaaggcgacacggtcgtcttctcctcgaagcagatccccggcaacgagatcgcgatcggc
cgcatccagaacaggctggccgagcgcgggatattgatggtcaccgaccggcaggcgcac
gtccatgtctcgggccatccggggcggcccgagctggagttgatgtataagtggattcgg
ccggagatcatcctgcccgtccatggcgagatgcggcacatggcggaacaggcgcggttc
gcggccgcctgcggcgtgccgcgcggcatcgtccagcagaacggccaggtcatccggctt
gcgcccgatgggccggagctggtggggcatgagcgcaccggccgcctcgtgctggatggc
gacgtgatcctgccggccgacggcgccacactgaacgagcggcggcggatttcgctgcat
ggcttcatttccgctacggttgtgctggatgcgagggggaatgtgcggggcgagcccgcg
atcgcgattcagggcgtgccggtggaggaggatcgcgaggatttcctggccgatgcgcgc
ctcgcggcggcggaggcggcgacggacggcccaaaggacgaggccaagctgcgcgaggcg
atccgcctggcggtgcgccgccgcgcgacgcaatggaccggcaagaagccgatcgtcgac
gtttcgatcatccgcgtctga
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integrated database retrieval system
