Sphingomonas sp. MM-1: G432_03865
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Entry
G432_03865 CDS
T02498
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sphm
Sphingomonas sp. MM-1
Pathway
sphm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sphm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G432_03865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphm03400
]
G432_03865
Enzymes [BR:
sphm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G432_03865
DNA repair and recombination proteins [BR:
sphm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G432_03865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AGH48500
UniProt:
M4RXQ3
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All DBs
Position
805509..808985
Genome browser
AA seq
1158 aa
AA seq
DB search
MTDLHRILKADRPLTLAGVAQGFLPWLLADLARAAAARGGRTVFITPDDAAMRGLTDAAT
YFAPEIEVLAFPAWDCLPYDRASPSLRATSQRLATLHALQRKADRPQLLVTTVNAATQRT
LTPFRIRQLVARLAPGERIDRDALAVLLQANGYVRTDTVADAGEFAVRGSLLDLFPSGED
LALRLDFFGDEIESVRRFDPADQRTVDRIDGFTLLPASEALLDEESIKRFRTRYREAFGA
TATGDPLYQAISEGRRLAGMEHWLPFLEDRLSTLFDHLADDDVIVRDAGDAGAADARFEA
IADYHANRVRAQSADPGSYRPIAARALYLDNEEWQAAIADRPIHLVTAFHEPESADVLEF
GVDGPRDFAPERAQNLNVYEAVTEHVEAQRRGGRRVILASYSAGARERLGGLLKDHGLDR
LAEADSWQDALGKAAQGATALIVVPLDHGFTTPDIALLTEQDMLGDRLVRRAKRKKSADA
FMAELATLSPGDLVVHSDHGIGRYEGLTSIPVGTSPHDCVALTYAGGDKLYVPVENIDVL
SRYGAENEGVQLDKLGGVAWQARKARMKERIREIAGELIATAALRALRPADVALPDAGGY
PAFVDRFPYQETDDQDRAIGDVLDDLARGTPMDRLVCGDVGFGKTEVALRAAFVAAMAGM
QVAVVVPTTLLARQHFTNFVERFQGFPINIGRLSRLVPAAEAKRTKEGLADGSIDIVVGT
HAVIAKNVEFKRLGLVIVDEEQRFGVTHKERLKAMKADVHVLTLTATPIPRTLQMAMSGL
RELSVIQTPPVDRLAVRTYVMPWDPVVLREALLREHYRGGQSFFVVPRINDLPDIEDFLR
KEVPEVRYVVAHGQMSPTEVEERMSAFYDKKFEVLVSTTIVESGLDIPSANTLIIHRADR
FGLAQLYQLRGRVGRAKTRAYAYFTTPATRTITETAMKRLHVLSDLDSLGAGFQLASHDL
DIRGAGNLLGDEQSGHIKEVGFELYQSMLEDAIMEAKAGGLREAAVSARDFSPQINVDAP
ILIPEEYVPDLDLRMGLYRRMNELETANEIEAFAAELIDRFGKLPEPTQNLLTVIQIKLN
CRKAHVAKLDAGPRGALVTFFNDSFPDPAGLIAYAQRLQGTAKLRPDNKLVITRPWPDAK
SRLNGALQLSRGLAKILR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatctccaccgcatcctgaaggccgatcgcccgcttacgcttgccggcgtggcc
cagggcttcctgccctggctgctggccgatcttgcccgggccgccgccgcgcgcggcggg
cggacggtgttcatcacccccgatgatgccgcgatgcgcgggctgaccgatgccgccacc
tatttcgcgcccgagatcgaggtgctggccttccccgcctgggattgcctgccctatgac
cgcgcctcgccgtcgctgcgggcgacgtcgcagcggctggcgacgctccacgccttgcag
cgcaaggccgatcgcccgcaattgctggtgacgacggtgaacgccgccacccagcgcacc
ctcacccccttccgcatccgccagctcgtcgcccggctcgcccccggcgaacggatcgat
cgcgatgcgctggccgtgctgctgcaggccaacggctatgtccgcaccgatacggtggcc
gatgccggcgaattcgcggtgcgcggcagcctgctcgatcttttcccgtcgggcgaggat
ctggcgctgcggctcgacttcttcggcgacgagatcgaaagcgtccgccgcttcgacccc
gccgaccagcgcacggtggaccggatcgacggcttcacgctgctgccggcatccgaggcg
ctgctggacgaggagagcatcaagcgcttccgcacccgctatcgcgaggcgttcggcgcc
acggcgacgggcgatccgctctaccaggcgatatcggaggggcgccggctggcggggatg
gaacattggctgcccttcctggaggaccggctttccaccctgttcgatcatctcgccgac
gatgacgtgatcgtgcgcgacgccggggatgcgggcgccgccgatgcccggttcgaagcg
atcgcggattatcacgccaaccgcgtgcgcgcccagtccgccgatcccggcagctaccgc
ccgatcgcggccagggcgctctatctcgacaatgaggaatggcaggcggccatcgccgat
cggccgatccacctcgtcaccgccttccacgagccggaaagcgccgacgtgctggagttc
ggcgtggacggcccgcgcgacttcgcgcccgaacgcgcgcagaacctgaacgtctacgaa
gccgtgaccgagcatgtcgaggcgcagcggcgcggcggccggcgcgtcatcctcgccagc
tattccgccggcgcgcgcgaacggctgggcggcctgctgaaggatcacgggctggatcgg
ctggcggaggccgatagctggcaggatgcgctgggcaaggcggcgcagggcgccaccgcg
ctgatcgtcgtgccgctcgaccacggcttcaccacgcccgacatcgccctcctgaccgag
caggacatgctgggcgaccggctggtgcggcgggcgaagcgcaagaaatcggccgacgcc
ttcatggccgagctggcgacgctctcgccgggcgacctcgtggtccattccgatcatggc
atcggccgctatgaagggctgacctcgatcccggtcggcacgtccccgcacgattgcgtg
gcgctcacctatgccggcggcgacaagctttacgtgccggtcgagaatatcgacgtcctc
tcccgctacggcgcggagaatgagggcgtccagctcgacaagctgggcggcgtcgcctgg
caggcgcgcaaggcccggatgaaggagcgcatccgcgagatcgcgggcgagctgatcgcc
accgccgccttgcgggcgctgcgcccggcggacgtggcgcttcccgatgccggcggctac
cccgccttcgtcgatcgcttcccctatcaggaaacggacgatcaggatcgcgcgatcggc
gacgtgctggacgatctcgccaggggcacgccgatggaccggctggtctgcggcgatgtc
ggcttcggcaagacggaagtggcgctgcgcgcggcattcgtcgcggccatggcagggatg
caggtggcggtggtggtgccgaccaccctgctcgcccgccagcacttcaccaacttcgtc
gagcgtttccagggcttcccgatcaatatcggccggctttcccggctggtgccggcggcc
gaggccaagcggaccaaggaagggctggccgacggatcgatcgacatcgtggtcggcacc
catgcggtgatcgcgaagaatgtggagttcaagcgcctcggcctcgtcatcgtcgacgag
gagcagcgcttcggcgtcacccacaaggaacggctgaaggcgatgaaggcggacgtccac
gtcctcaccctcaccgccacgccgatcccgcgcaccctgcagatggcgatgtccggcctg
cgcgagctttcggtgatccagacgccgcccgtcgatcggctggcggtgcgcacctatgtg
atgccgtgggacccggtggtgctgcgcgaggcgctgctgcgcgaacattatcgcggcggg
cagagcttcttcgtggtgccgcgcatcaacgacctgcccgatatcgaggatttcctgcgc
aaggaggtgcccgaggtccgctatgtcgtcgcccacggccagatgagcccgaccgaggtg
gaagagcggatgtccgccttctacgacaagaagttcgaggtgctggtttccaccacgatc
gtggaaagcgggctggacattcccagcgccaacacgctcatcatccaccgcgccgaccgg
ttcggcctcgcgcagctctaccagcttcggggccgcgtgggccgggccaagacgcgggcc
tatgcctatttcaccacgcccgccacgcgcaccatcaccgaaaccgcgatgaagcgcctg
cacgtgctgtccgatctcgattcgctgggcgcgggcttccagctcgccagccacgatctc
gacattcgcggcgcgggcaatctgctgggcgacgagcaatccggccatatcaaggaggtg
gggttcgaactctaccagtcgatgctcgaggacgcgatcatggaggcgaaggccggcggc
ctcagggaggcggcggtttccgcgcgcgacttctcgccccaaatcaacgtcgacgcgccg
atcctcatccccgaggaatatgtgcccgatctcgacctgcgcatgggcctctatcgccgg
atgaacgagctggagaccgccaacgagatcgaggccttcgccgccgagctgatcgaccgt
ttcggcaagctgcccgaaccgacgcaaaacctgctgacggtgatccagatcaagctcaac
tgccgcaaggcgcatgtcgccaagctggatgccggcccgcgcggcgcgctcgtcaccttc
ttcaacgacagcttccccgatccggccgggctgatcgcctatgcccagcggctgcagggc
acggccaagctgcggccggacaacaagctggtcatcacccgcccctggcccgatgcgaag
tcgcggctgaacggcgcgctccagctttccaggggcctggcgaaaatccttcgctga
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