Sphingomonas sp. MM-1: G432_09625
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Entry
G432_09625 CDS
T02498
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sphm
Sphingomonas sp. MM-1
Pathway
sphm03410
Base excision repair
sphm03430
Mismatch repair
sphm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sphm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
G432_09625
03430 Mismatch repair
G432_09625
03440 Homologous recombination
G432_09625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphm03400
]
G432_09625
DNA repair and recombination proteins [BR:
sphm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
G432_09625
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
G432_09625
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G432_09625
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Motif
Other DBs
NCBI-ProteinID:
AGH49650
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Position
1999728..2001509
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AA seq
593 aa
AA seq
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MGMTAVLNISRSILGQPWRWRGSGTDGRDADFRPDDLVAGLLMARGVPREAVEAHRAPTI
RGFMPDPSIFRDMDQAAERLADAVARGEPVTIFGDYDVDGATSAALLIRLLRGLGLDPQA
YIPDRLMEGYGPSGEALVRIAAGGARLIVTVDCGAQAFEALEMARATGVDVIVVDHHKCA
AALPPALALVNPNRLDEAADAAAHGHLAAVGVAFLLGAALLRTLRARNWFATRAEPRLID
LLDLVALGTVADVAALRGLNRAFVAQGLKVMAQRHNIGLAALTQAARLDRAPTCTDLGFA
LGPRINAGGRVGKSDLGVRLLTTEDPEEACTIAAELDRLNGERRAIEMLVTEAAEVAAAT
QGNRAVTLVSGAGWHPGVIGIVAGRLKEKLGRPAIVVAMDDAGIGKGSGRSISGVDLGAA
VLAAKDMGLLVAGGGHAMAAGLTVEQARLDALADFLDDRLAADVARAQDGRALLLDAVLT
PGGINPALVDALDAGGPYGAGWPSPRVAAGPVRIVRADIVGQGHIRAIVQGDDGRAIKTI
AFRQADSALGQALLGAGADRRLWLAGRPKVDDWNSRPTAELHLEDAAWADEHR
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgggcatgactgccgtgctcaacatctcccgatcgatcctcggccagccctggcgctgg
cggggatcgggcaccgacggccgcgacgcggatttccggccggacgacctcgtcgccggc
ctgctgatggcgcgcggcgtcccgcgcgaggcggtggaggcgcaccgcgcgcccaccatc
cgcggcttcatgccggacccgtcgatcttccgcgacatggaccaggctgccgagcggctg
gcggacgccgtcgcgcgcggcgagcccgtgaccatcttcggcgactatgacgtcgacggg
gcgacatcggcggcgctgctgatccggctgctgcgggggctggggctcgatccgcaggcc
tatatccccgaccggctgatggagggctatggcccgtcgggcgaggcgctggtgcggatc
gcggccggcggcgcgcggctgatcgtcaccgtcgattgcggcgcccaggcgttcgaggcg
ctggaaatggcgcgcgccaccggcgtcgacgtgatcgtcgtcgatcatcacaaatgcgcc
gccgctctgcccccggcgctggcgctggtgaaccccaaccggctggacgaagcggccgac
gccgccgcccacggccacctcgccgccgtcggcgtcgccttcctgctgggcgccgcgctg
ctgcgcacgttgcgcgcgcgcaactggttcgccacccgcgccgaaccccggctgatcgac
ctgctcgatctcgtggcgctgggcacggtggccgatgtcgcggcgctgcgcgggctcaac
cgcgccttcgtcgcccagggcctgaaggtgatggcgcagcggcacaatatcggcctggcc
gccctcacccaggccgcccggctggatcgcgcgccgacctgcaccgatctcggcttcgcg
ctggggccgcgcatcaatgccggcggccgcgtcggcaagtccgacctcggcgtccgcctg
ctgaccaccgaggacccggaggaggcctgcacgatcgccgccgagttggaccgcttgaac
ggcgagcggcgcgccatcgagatgctcgtcaccgaggcggcggaagtcgccgccgccacg
cagggcaaccgcgcggtgacgctggtttcgggcgccggctggcatcccggcgtgatcggc
atcgtcgccggccggctgaaggagaagctcggccgccccgccatcgtcgtggcgatggac
gatgccggcatcggcaagggttccggacggtcgatctcgggcgtcgatctcggcgcggcg
gtgctggcggccaaggatatgggcctgctcgtcgccggcggcggccacgccatggccgcc
gggctgacggtggagcaggcgaggctcgacgcgctcgccgacttcctcgacgacaggctc
gcggcggacgtggcccgcgcgcaggacggccgtgccttgctgctcgatgcggtgctgacg
ccgggcgggatcaacccggccctggtcgatgcgctcgatgccggcggcccttatggcgcg
ggctggccgtcgccgcgcgtggcggccggaccggtccgcatcgtcagggccgatatcgtc
ggccagggccatatccgcgccatcgtccagggcgacgacggccgcgcgatcaagacgatc
gccttccgccaggcggacagcgcgctcggccaggccctgctcggcgcgggcgcggatcgc
cgcctgtggctggccggccggcccaaggtggacgactggaacagccgcccgacggccgag
ctccacctcgaggatgcggcctgggcggacgagcatcgctga
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