Sphingomonas sp. MM-1: G432_17375
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Entry
G432_17375 CDS
T02498
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sphm
Sphingomonas sp. MM-1
Pathway
sphm03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sphm00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G432_17375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sphm03021
]
G432_17375
03400 DNA repair and recombination proteins [BR:
sphm03400
]
G432_17375
Enzymes [BR:
sphm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G432_17375
Transcription machinery [BR:
sphm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G432_17375
DNA repair and recombination proteins [BR:
sphm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G432_17375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
AGH51193
UniProt:
M4S8B3
LinkDB
All DBs
Position
complement(3689759..3694012)
Genome browser
AA seq
1417 aa
AA seq
DB search
MNELTNFANPIAKPETFDQIRIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVIEPGLTPLEKYQLLTEDELLEAQDEYGEDAFTAG
IGAEAVRKMLESLDLEGERVDLLKELAETKSELKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKQGEPGEGMLLADMIEVHQALNT
GAVTLHTKIVSRVPQTDEAGNQYMKRYETTPGRMLLGECLPKSHKVPFETVNRLLTKKDI
GDVIDEVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMVIPAAKDPLVEETRTLV
KDYEQQYQDGLITQQEKYNKVIDAWSRCGDRVAAEMMKEIQAVKTDPETGREKPINAIYM
MAHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVSQDCVVVELDCGTERALEMKAIVQGGATIASLGERILGRTT
AEDIVDSKTNEVVIPEGTLLDEAHIVQIEAISLQSVKIRSPLVCESKNGVCAACYGRDLA
RGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNQESNLEAVADGTLVYRDVPT
IIDPRGRRLTLARNGEIAILDMDGRERATHRLPYGATLLVEDGAIVSKGDRIAEWDPSFS
PVITEKGGIVRFQDMIENRTVREETDEATGISQRVIVEDHLKSKKDDFRPRITLLDESSG
ETGVSRLIPGSIVAVEDGQTVQAGDVLARVPREAAKTRDITGGLPRVAELFEARKPKENA
IIAKVSGRVEFGKDYKAKRKILIRPEDGSEAIEYLIPKSKVIDVQEGDYVKRGDNLIGGS
PDPHDILEVLGIEPLAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLQKVEITAAGDSTL
LPGEQLDRIEMDEVNEKLVAEGKLPAEGKPVLLGITKASLQTRSFISAASFQETTRVLTE
ASVQGKIDTLDGLKENVIVGRLIPAGTGAGMNRLRVTASSRDAALRASQKAWQASLVAPE
TAAEEHAAELRRPVEDDTGDDPLGAVVGEDFTTEDLE
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactcaccaatttcgccaatccgatcgcgaagcccgagaccttcgaccagatc
cgcatcggcatcgcctcgccggaacgcatccgttcctggtcgttcggcgagatcaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcgcgc
atcttcggtccgatcaaggattacgaatgcttgtgcggcaagtacaagcgcatgaaatac
aagggcatcgtctgcgaaaagtgcggcgtcgaagtcaccgtctcgaaggtccgccgcgaa
cgcatgggccatatcgagttggcggcgccggttgcgcacatctggttcctgaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcaactcgagcgcgtgctctac
ttcgaagcctatatcgtcatcgagccgggcctgaccccgcttgagaagtatcagctcctc
accgaggacgagcttctcgaggcgcaggacgaatatggcgaggacgccttcaccgccggc
atcggcgccgaagccgtgcgcaagatgctcgagagcctcgatctcgagggcgagcgcgtc
gatcttctcaaggaactggccgagaccaagtcggagctgaagcccaagaagatcatcaag
cgcctgaaggtcgtcgaaagcttcatcgaatccggcaaccgcccggaatggatgatcctg
gaagtgatcccggtcattccgccggaactgcgcccgctggtgccgctggatggcggccgc
ttcgcgacgtcggacctgaacgacctctatcgccgcgtcatcaaccgcaacaaccgcctg
aagcggcttatggagttgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagccgtcgacgcgctgttcgataacggccgccgcggccgcaccatcacgggcgcc
aacaagcgtccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattccggccgttcggtgatcgtgaccggtccg
gagctgaagctccaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcccgcctggacgccaagggtctctccatgaccctgaagcaggccaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctggacgaggtgatccgcgagcat
ccggtgctgctgaaccgcgcgccgacgctccaccgcctcggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagcttcacccgctggtctgctcggccttcaacgcc
gacttcgacggcgaccagatggccgtgcacgtcccgctctcgcttgaggcgcagctggaa
gcgcgcgtcctcatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtgctcggtctctactatctctcgatggagaagcagggc
gagccgggcgaaggcatgctgctggcggacatgattgaggtccaccaggcgctcaacacc
ggtgccgtgacgctccataccaagatcgtcagccgcgtcccgcagacggacgaggccggc
aaccagtatatgaagcgctacgagaccacgccgggccgcatgctgctgggcgaatgcctc
cccaagagccacaaggtgcccttcgagacggtcaaccgcctgctcaccaagaaggacatc
ggcgacgtgatcgacgaggtctatcgccacaccggccagaaggagacggtgctgttcgcc
gacgcgatcatggcgctgggcttccgtcacgccttcaaggccggcatctcgttcggcaag
gacgacatggtgatcccggcggcgaaggacccgctggtcgaggagacgcgcacgctcgtg
aaggattacgagcagcagtatcaggacggcctgatcacccagcaggaaaagtataacaag
gtgatcgacgcctggtcgcgctgcggcgaccgcgtggcggccgagatgatgaaggagatc
caggcggtcaagacggacccggagaccggccgcgagaagccgatcaacgccatctacatg
atggcgcattccggtgcccgtggctcggccgcccagatcaagcagcttgccggcatgcgc
ggcctgatggccaagccttcgggcgagatcatcgagacgccgatcatctccaacttcaag
gaaggcctgaccgtccttgaatatttcaactccacccacggcgcccgcaagggtctcgcg
gatacggcgttgaagaccgcgaactcgggttatctcacccgtcgtctggtcgacgtgtcg
caggattgcgtcgtcgtcgagctggattgcggcaccgagcgcgcgctggagatgaaggcg
atcgtgcagggcggcgccaccatcgcctcgctgggcgagcgtatcctgggccgcaccacg
gccgaggacatcgtcgacagcaagacgaacgaggtggtgatccccgagggcacgctgctc
gacgaggcgcacatcgtgcagatcgaggcgatcagcctccagtcggtcaagatccgcagc
ccgctggtctgcgaatcgaagaacggcgtctgcgcggcctgctacgggcgcgatctcgcc
cgcggcacgccggtgaacatcggcgaggccgtcggcgtcatcgcggcgcagtcgatcggc
gagccgggcacgcagcttacgatgcggaccttccacatcggcggcgccgcccagctcaac
caggaatcgaacctggaagccgtggcggacggcacgctcgtctatcgcgacgtgccgacg
atcatcgacccgcgcggccgtcgcctgacgctggcccgcaacggcgagatcgcgatcctc
gacatggatggccgcgaacgcgccacccatcgcctgccctacggcgccaccctgctggtg
gaagacggggcgatcgtctccaagggcgatcgcatcgcggaatgggacccctcgttcagc
ccggtcatcaccgaaaagggcggtatcgtccgcttccaggacatgatcgagaaccgcacg
gttcgcgaggaaaccgacgaagcgaccggcatttcgcagcgtgtgatcgtggaagatcat
ctcaagtcgaagaaggacgacttccgtccgcgtatcaccctgctcgacgagagcagcggc
gagaccggcgtgtcgcgcctgatcccgggatcgatcgtcgcggtcgaggacggccagacc
gtgcaggccggcgacgtgcttgcccgcgtgccgcgcgaagccgccaagacccgcgacatc
acgggcggtctgccgcgcgtggccgagctgttcgaagcgcgcaagccgaaggaaaatgcg
atcatcgccaaggtctccggccgtgtcgaattcggcaaggactataaggcgaagcgcaag
atcctgatccgtccagaagatggctcggaagcgatcgaatatctgatcccgaagtcgaag
gtgatcgacgttcaggaaggcgactacgtgaagcgtggcgacaacctgatcggcggcagc
ccggatccgcacgatattctggaagtgctcggcatcgagccgcttgccgaatatctcgtg
tcggaaatccaggaagtctatcgactgcagggcgtgaagatcaacgacaagcacatcgag
acgatcgtccgtcagatgctgcagaaggttgagatcacggcggccggcgattcgacgctg
cttccgggcgaacagctcgaccggatcgagatggacgaggtgaacgagaagctggtcgcc
gagggcaagctgcccgcggaaggcaagccggtgctgctcggcatcaccaaggcctcgctc
cagacccgcagcttcatctcggccgcgtcgttccaggaaacgacccgcgtgctgaccgag
gcttcggtgcagggcaagatcgacacgctcgatggcctgaaggagaatgtgatcgtcggc
cgcctgatcccggccggcactggcgcgggcatgaaccgcctgcgcgtcaccgcctccagc
cgcgacgcggcgctccgcgcctcgcagaaggcgtggcaggcctccctcgtcgcgccggaa
acggccgccgaggagcatgccgcggaactccgccgcccggtggaggacgacacgggtgac
gatcccctgggcgcggtggtcggcgaggacttcaccaccgaagacctcgaatag
DBGET
integrated database retrieval system
