Sphingobacterium sp. B29: BV902_12575
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Entry
BV902_12575 CDS
T04670
Name
(GenBank) hypothetical protein
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
sphn
Sphingobacterium sp. B29
Pathway
sphn03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BV902_12575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sphn03400
]
BV902_12575
Enzymes [BR:
sphn01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
BV902_12575
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
BV902_12575
DNA repair and recombination proteins [BR:
sphn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
BV902_12575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
UAE_UbL
Pox_A30L_A26L
TssR_C
HNOB
Motif
Other DBs
NCBI-ProteinID:
APU97079
LinkDB
All DBs
Position
complement(3025889..3026662)
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AA seq
257 aa
AA seq
DB search
MPELPDLQAFSKNLTKMLKGKVLEKAAIHNKQKTKVSLNELQTLEGKKLVKVYREGKRLF
FDFGKDATLSVHLMLHGKLIYSEDENPKYALVSMKFKDGGTLSITDFQRMAYIELNPEHA
NVMDALSEKLNPKLLFGLLQSSKAKIKTLLMDQNVIGGIGNAYADEILYEAGISPLSISN
KIPEEKVQHLAKAIKEVLENAEQQILKEHREIINGEIRDFMKVHNKNAKVDGKGHEILQT
KISGRTTYYTEQQKVFE
NT seq
774 nt
NT seq
+upstream
nt +downstream
nt
atgccagaattaccagacctacaggccttcagcaaaaatctcacaaaaatgcttaaaggt
aaagtgcttgaaaaagctgccattcacaacaaacaaaaaaccaaagtcagcctgaatgag
ctgcaaactctagagggcaaaaaactcgtcaaagtttatcgggaaggtaaaaggcttttt
tttgattttggcaaagatgctaccttgtcggttcatctcatgttgcatgggaaactgata
tattctgaagacgaaaacccaaagtatgcattagtttccatgaagtttaaggatggtggc
acgctatccattaccgactttcagaggatggcatatatagaattgaatcctgaacatgca
aacgtgatggatgcactttctgaaaagctaaatccaaaattacttttcggattgctgcaa
tcaagcaaggccaaaattaaaactctcctgatggaccaaaacgtcattggcggtattgga
aatgcctacgccgacgaaatcctgtatgaagcagggatatcaccactttcaatttcaaac
aaaatccccgaagagaaggttcaacatcttgccaaagcaattaaggaggtactggaaaat
gccgaacagcagattctaaaagagcatcgtgaaatcattaacggtgagataagggatttc
atgaaagttcataacaaaaatgcgaaggttgatggtaagggtcatgaaatattgcaaacc
aaaattagcggcagaactacttattacacagagcaacaaaaagttttcgaatag
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