Sphingobacterium sp. B29: BV902_15295
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Entry
BV902_15295 CDS
T04670
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
sphn
Sphingobacterium sp. B29
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sphn03016
]
BV902_15295
Enzymes [BR:
sphn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BV902_15295
Transfer RNA biogenesis [BR:
sphn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BV902_15295
Prokaryotic type
tRNA splicing ligases
BV902_15295
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
APU99800
LinkDB
All DBs
Position
complement(3624084..3625505)
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AA seq
473 aa
AA seq
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MENKRINGNDLIALGYKENHTLGVALKINSKRHGFTRVEILEKFKAVLEDPIGYSEDAVF
GILAHAILGQEAIDKTLIALNETPAEYTIYGASEIETGAKAQMSVAMKLPVSVAGALMPD
AHQGYGLPIGGVLATNNAVIPYGVGVDIGCRMALSIFDLPASFLEDNLMTLKDIILRNSK
FGAGNGYLRHERVDHEVLDNKLFRENSLLSSLKDKAWTQLGSSGGGNHFVEFGIVEFEER
DEVLNIDSGAYLGLLTHSGSRGMGATIAAHYTKLAKSLCKLPYQAENLAYLDLDSHEGQE
YWLAMNLAGDYASACHEVIHEKITLALGAESLAKVENHHNFAWKETWNGQEVIVHRKGAT
PAAKGVMGIIPGSMATPGFLVRGKGESNAIQSASHGAGRLMSRTQAIKTLSSHDLHSMLK
DKGIMLLGAGMDEAPMAYKDIHTVMASQKDLVDVVAKFSPKIVRMADDGSRED
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaaataagagaataaatggcaatgatttaattgcattaggatataaagagaatcat
actttgggtgttgcattgaaaatcaacagtaaaagacacggttttacgcgggtagaaata
ctcgaaaagttcaaggctgtcttggaagatccaatcggctattcagaagatgctgttttc
ggaattttggcccatgccatacttgggcaagaggctattgataagacgttaattgcattg
aacgagactccggcggaatatacgatttatggtgcgtctgagatcgaaacaggggcgaaa
gcacaaatgagtgtcgccatgaaattacctgtttcagttgcgggagcattgatgccagat
gcgcatcaaggatatgggttgccaattggtggagtactggcgactaataatgcggtgatt
ccttatggggtcggtgtcgatattggctgtcgtatggctttgtcgatctttgatttgcca
gcctcatttttggaagacaatttaatgaccttgaaagacattattctgcgtaatagtaag
tttggtgctggcaatggatatttgagacatgaacgtgtcgatcatgaggtactagataac
aagttgtttagggaaaacagtttgctttcttcattgaaggataaggcctggacgcaattg
ggatcttcgggtggggggaatcattttgtggagttcggtatagtcgaatttgaagaaaga
gatgaggttttgaacattgatagcggagcctatttaggcttattgacccattcaggttca
agaggaatgggcgctaccattgctgcacattatacaaaattagccaaatccttgtgtaag
ttgccttaccaagcggaaaatctggcctatctggacctggacagccatgaagggcaagaa
tattggctagcgatgaatctcgccggcgattatgcatcagcttgccatgaagtgatccat
gaaaagattacgttggctttaggggccgaatcgttggcgaaggttgaaaatcaccacaat
tttgcatggaaggaaacctggaatggtcaagaggttattgtccatcgaaaaggtgctaca
ccggctgcaaaaggggtaatggggattattccaggctccatggctacaccaggatttttg
gttcgtggaaaaggggagtcgaatgcgatacaatcggcatctcatggggcaggtcgactg
atgagccgtacgcaagcgattaaaacgctatcttcccatgatctccattcgatgcttaaa
gataaaggtattatgttgcttggggcagggatggatgaagcgccgatggcctataaagac
atccataccgtaatggcttcacaaaaagatcttgttgatgtcgtggcaaaattttcgccc
aagatagtccgtatggcagatgatgggagcagggaagattaa
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