Sphingobacterium sp. B29: BV902_16275
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Entry
BV902_16275 CDS
T04670
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sphn
Sphingobacterium sp. B29
Pathway
sphn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV902_16275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphn03019
]
BV902_16275
03400 DNA repair and recombination proteins [BR:
sphn03400
]
BV902_16275
Enzymes [BR:
sphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BV902_16275
Messenger RNA biogenesis [BR:
sphn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV902_16275
DNA repair and recombination proteins [BR:
sphn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BV902_16275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
RecQ_Zn_bind
HRDC
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
APU97697
LinkDB
All DBs
Position
complement(3837779..3839968)
Genome browser
AA seq
729 aa
AA seq
DB search
MEIEKSLFDNLQDFFGFDTFKGDQEAIITSILQRRDTFVIMPTGGGKSICYQLPALMSEG
TAIVISPLIALMKNQVDQLRAFGGEDSIAHFLNSSLNKSEITKVKDDVLAGKTKLLYVAP
ESLAKQDNLEFLHQITVSFVAVDEAHCISEWGHDFRPEYRKIRQVINEIGANIPIIALTA
TATPKVQSDIRKNLQMNDAVLFKSSFNRSNLYYEVRPKKDVVKEIVRFIKTKSGKTGIVY
CLSRKKVEEISEVLNLNGIKALPYHAGLDAKTRADTQDKFLMEDVEVIVATIAFGMGIDK
PDVRYVIHHDIPKSMEGYYQETGRAGRDGGDGYCLAFYSEKDVEKLTKFMKDKPVAEREI
GTQILKEVIDYSESAVCRRKQILHYFGENFDEQGCSNMCDNCRSEKEYFEAEDSLKNVLG
FIQEQGEKFDDHHVINVMMGQNNQPVSSYKHDEHRLFGTGKEKGVIYWKSLLRQAVLDNF
IEKDIDHYGLLKLTDIGRHYLDNPYQLKFVLNRPIEGGDSTNSEDTGQGTGALDTVLLGM
LKDLRKKIAKGKSLPPFVIFQDPSLEEMCTHYPIAIDELKQIQGVGNGKAIKFGAPFIAL
IKDYVEENEIDRPVDLVIKSTANKSALKVSIIQNIDRKIALDDIASAKGITYEEILKEIE
TIVNAGTKININYFIDEIIDEDRQDEVYDYFKTAETDSINDALKELGGDDYSYEDLQLMR
IKFLSELGN
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atggaaatagaaaaatcacttttcgacaatttacaagatttttttggttttgatactttt
aaaggggatcaagaggcaattataactagtattcttcaacgaagagatacttttgtaata
atgccaaccggaggaggaaaatcaatttgctaccagcttcctgctcttatgagtgaggga
actgcaattgttatttctccgctgattgctttaatgaaaaaccaggtagatcagcttcgt
gcattcggtggcgaagatagtatcgctcattttttaaattcatcattgaataagagcgaa
attacaaaggttaaggatgatgtactcgccgggaagaccaaattgctgtatgtagctcca
gaatcccttgccaagcaagataatttggaattcttacatcagattaccgtgtctttcgta
gcggttgacgaagcgcattgtatttcggaatgggggcacgatttcagaccagaatatcgt
aaaatacgccaggtaatcaacgaaataggtgccaatatccctattatcgctcttacggca
actgctactcccaaagttcagtcggatatccgtaaaaatttacagatgaatgatgctgtt
ttatttaaatcatcatttaatcggagcaatctgtattatgaggtgcggccaaaaaaggat
gttgttaaggagattgttcgttttatcaaaaccaaatcgggaaagactggtattgtctat
tgtttgagccgtaaaaaggtagaagagatcagtgaggttttgaacctaaatggcattaaa
gcgttaccttatcatgctggtctagatgcgaaaacgagagctgatacacaggataaattt
ttgatggaagacgtcgaagttattgtggctaccatcgctttcggtatgggaatagacaaa
cctgacgttcgttatgtcattcaccatgatataccaaaatctatggaaggatactatcag
gaaactggacgtgctggacgtgatggcggagatggttattgtttggctttttactcggaa
aaagatgttgaaaagctgaccaaatttatgaaagataaacctgtggccgaacgcgagatc
ggtacacagatcttaaaagaggttattgattattcggagtctgcagtatgtcgtcgtaaa
caaattcttcattattttggagaaaattttgacgagcagggctgcagtaacatgtgcgat
aactgccgctcggagaaagaatattttgaggccgaggactccctgaaaaatgtactgggc
ttcattcaggagcagggcgagaaatttgatgatcatcacgtgatcaacgtcatgatgggt
caaaataatcaacctgtatcttcctataaacatgatgaacatcgtcttttcggaacgggt
aaagagaaaggtgttatctattggaaatctttacttagacaggcagtgcttgataacttt
atcgaaaaagatattgatcactatggccttttaaaattgacagatattggccgtcattat
ttggataacccttatcaactaaaatttgttttgaatcgtccaattgaggggggagatagc
acaaattcggaagatacagggcaaggcacaggagccttagataccgtcttgttgggtatg
cttaaagacctacgcaagaaaattgcaaaagggaagtcattgcctccgtttgtcatcttt
caagatccttcgctggaagaaatgtgtacacattatccaattgccatcgatgagttgaaa
cagatccagggagtagggaatggtaaagcgattaaatttggcgcaccgtttattgccttg
atcaaagattacgttgaggaaaatgaaatcgatagacctgtagatcttgtcattaaaagt
acagctaataaatcggcattaaaggtgtctattattcaaaatatcgatcgtaaaatagca
ttggatgatattgcttcagctaaggggataacttacgaggaaatattgaaggaaatagaa
acgattgtaaatgcgggcacaaaaatcaatatcaattattttattgacgagattattgat
gaggatcgccaggatgaggtatacgactattttaagacagccgagactgattcaattaat
gatgcgcttaaagaacttggaggggatgattacagttatgaagatctccaattgatgcga
atcaaatttttatcagagcttggcaattaa
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