Sphingobacterium sp. B29: BV902_18230
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Entry
BV902_18230 CDS
T04670
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sphn
Sphingobacterium sp. B29
Pathway
sphn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sphn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV902_18230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sphn03019
]
BV902_18230
Enzymes [BR:
sphn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BV902_18230
Messenger RNA biogenesis [BR:
sphn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BV902_18230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
AAA_19
CMS1
DEDD_Tnp_IS110
PhoH
ERCC3_RAD25_C
RecO_N
EB1
Motif
Other DBs
NCBI-ProteinID:
APU98036
LinkDB
All DBs
Position
4236197..4237321
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AA seq
374 aa
AA seq
DB search
MEFKQLSLIAPLLKAITETGYTHPTAIQQKAIPIVLQGNDLIGCAQTGTGKTAAFALPLL
QRLEETKTLGKLVPIRALILTPTRELAIQIGDNINLYRKYLKLNYCTIFGGVSQEKQVKE
IKKGIDILVATPGRLLDLMNQKIVSLDKIEILILDEADNMLDMGFIHDIKKILAKVPSKR
QTLFFSATMPPNIRKFAHGILHKPVEVDVTPVSSTAEKVNQSVFFVEKKEKIRLLTSLLK
KLKNERTIVFSRTKHGADKIVKLLTKNGLRAAAIHGNKSQNARQKALGEFKDSHLKILIA
TDIAARGIDIEQLPLVINYDLPNVPETYVHRIGRTGRAGQEGKAISFCDVEERPYLADIE
KLIGLKIKIEKMNK
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggaatttaaacaactcagtttaatcgctccgcttttaaaagcaataacagaaacagga
tacacacaccctacagcaattcaacaaaaagccattccaattgtattgcaaggcaacgac
cttatcggttgtgcacaaacaggaaccggaaaaacggccgcttttgctcttccgcttttg
caacgtcttgaagaaactaagacattaggtaaactcgttcccattagagctttgattctt
acgccaacacgtgaactagccattcaaattggagacaatatcaacttataccgaaaatat
ctaaaactaaactattgcactattttcggtggagtaagccaagaaaagcaagttaaagaa
attaaaaaagggatcgatattcttgttgccacccccgggcgcttattggatttaatgaac
caaaaaatagtttctctagataaaatcgagatcttgatattggacgaagcggacaacatg
cttgacatgggttttatccatgacatcaagaagatcctcgccaaggttccttcaaagcga
caaacattgtttttctcggcgacaatgcctcctaatatccgtaaattcgcacatggaata
ctacataaacctgtcgaggttgacgtcacaccggtaagctcaacggctgagaaagtaaat
caatctgtattttttgtagaaaagaaggagaagatcagattattgacaagcctattaaaa
aagctgaaaaatgagcgcactattgtcttctccagaacaaaacatggtgccgataaaatc
gttaagttgcttactaaaaatggcttgagagcagcggccattcacggaaataaatcgcaa
aatgcaagacaaaaagctttaggtgaatttaaggacagtcatctaaaaattttgatcgct
accgatattgcggctagaggaatagatatcgaacaactccctcttgtcatcaactatgat
cttcccaatgtacctgaaacctatgtccatcgcattggtagaacaggaagagctggtcag
gaaggaaaagccatttctttctgcgatgtggaagaaagaccgtatttagctgatattgaa
aaattaatcgggttaaaaatcaagatagaaaaaatgaataaatag
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